Basic Information
Gene Model:Bol042953
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000006
Sequence:
 | 
Gene Structure
Nucleotide Length:2847 bp
Transcript Length:1092 bp
Protein Length:363 aa
Strand:+
Location:C07: 33424599 : 33427445
Gene CDSs(6): 1-257 | 373-486 | 1866-2115 | 2194-2355 | 2451-2599 | 2688-2847 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 21 154 1.6e-08IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 80 94 NANot foundNot found
Segsegseg 164 185 NANot foundNot found
superfamilySSF103481Multidrug resistance 46 157 2e-06Not foundNot found
superfamilySSF103481Multidrug resistance 230 334 3e-07Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1639e-325NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q945L41e-112Q945L4_ARATH AT5g40210/MSN9_110 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15903(4 genes,3 taxa):Arabidopsis thalianaAT5G40210.1
ORTHOMCL15903(4 genes,3 taxa):Brassica oleraceaBol012882
ORTHOMCL15903(4 genes,3 taxa):Brassica oleraceaBol042953
ORTHOMCL15903(4 genes,3 taxa):Brassica rapaBra025320
Tandem Duplication
ClusterGene Num.Gene List
Cluster_5882Bol042953 Bol042954 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:32384859..34088266 (-)A.thalianaChr5:15884001..16480584 (+)43
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:32541733..34098976 (+)B.rapaA09:6365277..6751074 (-)42
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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