Basic Information
Gene Model:Bol042836
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000006
Sequence:
 | 
Gene Structure
Nucleotide Length:1814 bp
Transcript Length:948 bp
Protein Length:315 aa
Strand:-
Location:C07: 32436065 : 32437878
Gene CDSs(6): 1-378 | 453-529 | 650-696 | 1050-1150 | 1217-1306 | 1560-1814 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 96 198 8.642IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 83 211 5.2e-28Not foundNot found
Segsegseg 52 76 NANot foundNot found
Segsegseg 199 211 NANot foundNot found
Segsegseg 237 243 NANot foundNot found
HMMPfamPF02362B3 95 181 8.5e-27IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LW311e-118FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q2HUJ51e-68Q2HUJ5_MEDTR Transcriptional factor B3 OS=Medicago truncatula GN=MtrDRAFT_AC149131g24v2 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:1002847381e-09K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27533(2 genes,2 taxa):Brassica oleraceaBol042836
ORTHOMCL27533(2 genes,2 taxa):Brassica rapaBra025229
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:32384859..34088266 (-)A.thalianaChr5:15884001..16480584 (+)43
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:30958905..34514846 (+)B.rapaA06:18253952..20050081 (+)248
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
LAT3G2679098538289855989Chr3Subgenome_III(LF)196
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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