Basic Information
Gene Model:Bol042671
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000007
Sequence:
 | 
Gene Structure
Nucleotide Length:4266 bp
Transcript Length:1650 bp
Protein Length:549 aa
Strand:-
Location:C03: 28571983 : 28576248
Gene CDSs(3): 1-472 | 2814-3655 | 3931-4266 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21576UNCHARACTERIZED NODU 3 548 4.6e-203Not foundNot found
Segsegseg 287 307 NANot foundNot found
Segsegseg 465 482 NANot foundNot found
Segsegseg 47 56 NANot foundNot found
Segsegseg 176 189 NANot foundNot found
Segsegseg 220 226 NANot foundNot found
Segsegseg 241 258 NANot foundNot found
Segsegseg 6 12 NANot foundNot found
HMMPfamPF06813Nodulin-like 15 261 2.7e-156IPR010658Nodulin-like
superfamilySSF103473MFS general substrat 1 530 6.2e-26IPR016196Major facilitator superfamily, general substrate transporter
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9SW400.0Q9SW40_ARATH Putative uncharacterized protein AT4g34950 OS=Arabidopsis thaliana GN=T11I11.190 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1135(19 genes,8 taxa):Arabidopsis thalianaAT2G16660.1
ORTHOMCL1135(19 genes,8 taxa):Arabidopsis thalianaAT4G34950.1
ORTHOMCL1135(19 genes,8 taxa):Brassica oleraceaBol012699
ORTHOMCL1135(19 genes,8 taxa):Brassica oleraceaBol013705
ORTHOMCL1135(19 genes,8 taxa):Brassica oleraceaBol042671
ORTHOMCL1135(19 genes,8 taxa):Brassica rapaBra011573
ORTHOMCL1135(19 genes,8 taxa):Brassica rapaBra013059
ORTHOMCL1135(19 genes,8 taxa):Brassica rapaBra034666
ORTHOMCL1135(19 genes,8 taxa):Brassica rapaBra037294
ORTHOMCL1135(19 genes,8 taxa):Vitis viniferaGSVIVT01024048001
ORTHOMCL1135(19 genes,8 taxa):Oryza sativaOs09t0536700-01
ORTHOMCL1135(19 genes,8 taxa):Oryza sativaOs09t0536700-02
ORTHOMCL1135(19 genes,8 taxa):Oryza sativaOs09t0536700-03
ORTHOMCL1135(19 genes,8 taxa):Populus trichocarpaPOPTR_0004s17910.1
ORTHOMCL1135(19 genes,8 taxa):Populus trichocarpaPOPTR_0005s11450.1
ORTHOMCL1135(19 genes,8 taxa):Populus trichocarpaPOPTR_0009s13530.1
ORTHOMCL1135(19 genes,8 taxa):Sorghum bicolorSb02g031140.1
ORTHOMCL1135(19 genes,8 taxa):Carica papayaevm.TU.supercontig_37.158
ORTHOMCL1135(19 genes,8 taxa):Carica papayaevm.TU.supercontig_6.261
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:27841703..28839605 (+)A.thalianaChr4:16402280..16714953 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:28192081..28858052 (+)B.rapaA10:4796831..5299243 (+)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1666072187067221625Chr2Subgenome_I81
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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