Basic Information
Gene Model:Bol042488
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000007
Sequence:
 | 
Gene Structure
Nucleotide Length:2903 bp
Transcript Length:1755 bp
Protein Length:584 aa
Strand:+
Location:C03: 26480554 : 26483456
Gene CDSs(5): 1-97 | 180-397 | 475-980 | 1411-2074 | 2634-2903 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103473MFS general substrat 1 479 1.4e-18IPR016196Major facilitator superfamily, general substrate transporter
Segsegseg 271 284 NANot foundNot found
HMMPantherPTHR11654OLIGOPEPTIDE TRANSPO 1 497 2.9e-265Not foundNot found
HMMPantherPTHR11654:SF21NITRATE TRANSPORTER 1 497 2.9e-265Not foundNot found
HMMPfamPF04720DUF506 495 549 9.1e-26IPR006502Protein of unknown function DUF506, plant
HMMPfamPF00854PTR2 93 459 3.2e-61IPR000109Oligopeptide transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006857 Biological Process oligopeptide transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9M3901e-74PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LSF00.0Q9LSF0_ARATH Nitrate transporter (NTL1) OS=Arabidopsis thaliana GN=At3g25260 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ppp:PHYPADRAFT_1348146e-76K14638
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7942(9 genes,5 taxa):Arabidopsis thalianaAT3G25260.1
ORTHOMCL7942(9 genes,5 taxa):Arabidopsis thalianaAT3G25280.1
ORTHOMCL7942(9 genes,5 taxa):Brassica oleraceaBol008369
ORTHOMCL7942(9 genes,5 taxa):Brassica oleraceaBol042488
ORTHOMCL7942(9 genes,5 taxa):Brassica rapaBra011937
ORTHOMCL7942(9 genes,5 taxa):Brassica rapaBra013221
ORTHOMCL7942(9 genes,5 taxa):Brassica rapaBra013222
ORTHOMCL7942(9 genes,5 taxa):Populus trichocarpaPOPTR_0002s25060.1
ORTHOMCL7942(9 genes,5 taxa):Carica papayaevm.TU.supercontig_8.88
Tandem Duplication
ClusterGene Num.Gene List
Cluster_2863Bol042487 Bol042488 Bol042489 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25403046..26538414 (+)A.thalianaChr3:8565494..9271390 (+)55
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25161742..27330783 (+)B.rapaA07:7171993..9662044 (+)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2526091994389202000Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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