Basic Information
Gene Model:Bol042483
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000007
Sequence:
 | 
Gene Structure
Nucleotide Length:1167 bp
Transcript Length:660 bp
Protein Length:219 aa
Strand:+
Location:C03: 26450697 : 26451863
Gene CDSs(2): 1-357 | 865-1167 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 162 174 NANot foundNot found
HMMPfamPF01988DUF125 35 211 7.6e-62IPR008217Protein of unknown function DUF125, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P163131e-50NO21_SOYBN Nodulin-21 OS=Glycine max PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LSF62e-88Q9LSF6_ARATH Nodulin-lile protein OS=Arabidopsis thaliana GN=At3g25190 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15618(4 genes,4 taxa):Arabidopsis thalianaAT3G25190.1
ORTHOMCL15618(4 genes,4 taxa):Brassica oleraceaBol042483
ORTHOMCL15618(4 genes,4 taxa):Brassica rapaBra013226
ORTHOMCL15618(4 genes,4 taxa):Carica papayaevm.TU.supercontig_2.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25403046..26538414 (+)A.thalianaChr3:8565494..9271390 (+)55
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25161742..27330783 (+)B.rapaA07:7171993..9662044 (+)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2519091744579175776Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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