Basic Information
Gene Model:Bol042464
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000007
Sequence:
 | 
Gene Structure
Nucleotide Length:2801 bp
Transcript Length:2124 bp
Protein Length:707 aa
Strand:+
Location:C03: 26229621 : 26232421
Gene CDSs(6): 1-1644 | 1824-1916 | 2055-2155 | 2286-2332 | 2469-2545 | 2640-2801 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 560 662 10.659IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 547 675 6.8e-33Not foundNot found
HMMPfamPF02362B3 559 662 9.7e-27IPR003340Transcriptional factor B3
Segsegseg 343 354 NANot foundNot found
Segsegseg 376 394 NANot foundNot found
Segsegseg 464 477 NANot foundNot found
Segsegseg 43 54 NANot foundNot found
Segsegseg 78 86 NANot foundNot found
Segsegseg 95 112 NANot foundNot found
Segsegseg 159 167 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q015930.0ABI3_ARATH B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1
TrEMBL
Best HitE_value Description
O486191e-161O48619_POPTR ABI3 OS=Populus trichocarpa GN=ABI3 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_07056203e-09K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7938(9 genes,8 taxa):Arabidopsis thalianaAT3G24650.1
ORTHOMCL7938(9 genes,8 taxa):Brassica oleraceaBol042464
ORTHOMCL7938(9 genes,8 taxa):Brassica rapaBra013248
ORTHOMCL7938(9 genes,8 taxa):Vitis viniferaGSVIVT01028540001
ORTHOMCL7938(9 genes,8 taxa):Oryza sativaOs01t0911700-01
ORTHOMCL7938(9 genes,8 taxa):Oryza sativaOs01t0911700-02
ORTHOMCL7938(9 genes,8 taxa):Populus trichocarpaPOPTR_0002s25330.1
ORTHOMCL7938(9 genes,8 taxa):Sorghum bicolorSb03g043480.1
ORTHOMCL7938(9 genes,8 taxa):Carica papayaevm.TU.supercontig_8.179
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25403046..26538414 (+)A.thalianaChr3:8565494..9271390 (+)55
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25161742..27330783 (+)B.rapaA07:7171993..9662044 (+)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2465089973709001063Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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