Basic Information
Gene Model:Bol042450
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000007
Sequence:
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Gene Structure
Nucleotide Length:3793 bp
Transcript Length:1506 bp
Protein Length:501 aa
Strand:-
Location:C03: 25944756 : 25948548
Gene CDSs(9): 1-274 | 368-429 | 548-685 | 775-912 | 996-1169 | 1284-1373 | 1810-2196 | 2739-2881 | 3694-3793 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.605.10no description 1 310 1.6e-103IPR016162Aldehyde dehydrogenase, N-terminal
HMMPfamPF00171Aldedh 28 491 2.8e-252IPR015590Aldehyde dehydrogenase
superfamilySSF53720ALDH-like 17 500 1.9e-180IPR016161Aldehyde/histidinol dehydrogenase
PatternScanPS00687ALDEHYDE_DEHYDR_GLU 267 274 NAIPR016160Aldehyde dehydrogenase, conserved site
PatternScanPS00070ALDEHYDE_DEHYDR_CYS 295 306 NAIPR016160Aldehyde dehydrogenase, conserved site
HMMPantherPTHR11699:SF46ALDEHYDE DEHYDROGENA 64 501 6.9e-271Not foundNot found
HMMPantherPTHR11699ALDEHYDE DEHYDROGENA 64 501 6.9e-271IPR015590Aldehyde dehydrogenase
Gene Ontology
GO TermGO TypeDescription
GO:0008152 Biological Process metabolic process
GO:0016491 Molecular Function oxidoreductase activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
Q56YU00.0AL2C4_ARATH Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9RKT60.0B9RKT6_RICCO Aldehyde dehydrogenase, putative OS=Ricinus communis GN=RCOM_1053330 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G245030.0K12355REF1coniferyl-aldehyde dehydrogenase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4902(11 genes,7 taxa):Arabidopsis thalianaAT3G24503.1
ORTHOMCL4902(11 genes,7 taxa):Brassica oleraceaBol042450
ORTHOMCL4902(11 genes,7 taxa):Brassica rapaBra001952
ORTHOMCL4902(11 genes,7 taxa):Oryza sativaOs01t0591000-01
ORTHOMCL4902(11 genes,7 taxa):Oryza sativaOs01t0591000-02
ORTHOMCL4902(11 genes,7 taxa):Oryza sativaOs01t0591300-01
ORTHOMCL4902(11 genes,7 taxa):Populus trichocarpaPOPTR_0018s06060.1
ORTHOMCL4902(11 genes,7 taxa):Sorghum bicolorSb03g026550.1
ORTHOMCL4902(11 genes,7 taxa):Sorghum bicolorSb03g026570.1
ORTHOMCL4902(11 genes,7 taxa):Sorghum bicolorSb10g023000.1
ORTHOMCL4902(11 genes,7 taxa):Carica papayaevm.TU.supercontig_23.97
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25403046..26538414 (+)A.thalianaChr3:8565494..9271390 (+)55
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25161742..27330783 (+)B.rapaA07:7171993..9662044 (+)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2450389195608923073Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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