Basic Information
Gene Model:Bol042443
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000007
Sequence:
 | 
Gene Structure
Nucleotide Length:1848 bp
Transcript Length:1020 bp
Protein Length:339 aa
Strand:+
Location:C03: 25871611 : 25873458
Gene CDSs(5): 1-241 | 753-1003 | 1090-1262 | 1390-1584 | 1689-1848 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50192T_SNARE 247 309 17.599IPR000727Target SNARE coiled-coil region
superfamilySSF47661t-snare proteins 51 302 2.4e-42IPR010989t-SNARE
Gene3DG3DSA:1.20.1050.30no description 53 302 6.7e-30Not foundNot found
HMMPfamPF00804Syntaxin 53 159 1.1e-18IPR006011Syntaxin, N-terminal
HMMPfamPF05739SNARE 252 314 6.6e-20IPR000727Target SNARE coiled-coil region
HMMSmartSM00397no description 242 309 3.7e-15IPR000727Target SNARE coiled-coil region
PatternScanPS00914SYNTAXIN 253 292 NAIPR006012Syntaxin/epimorphin, conserved site
HMMPantherPTHR19957SYNTAXIN 11 277 4.7e-83Not foundNot found
HMMPantherPTHR19957:SF3SYNTAXIN 5 11 277 4.7e-83Not foundNot found
Segsegseg 229 246 NANot foundNot found
Segsegseg 212 217 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9LK091e-148SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7PEU91e-115A7PEU9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016796001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G243501e-148K08490STX5syntaxin 5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7935(9 genes,8 taxa):Arabidopsis thalianaAT3G24350.1
ORTHOMCL7935(9 genes,8 taxa):Brassica oleraceaBol042443
ORTHOMCL7935(9 genes,8 taxa):Brassica rapaBra001945
ORTHOMCL7935(9 genes,8 taxa):Vitis viniferaGSVIVT01015436001
ORTHOMCL7935(9 genes,8 taxa):Oryza sativaOs01t0179200-01
ORTHOMCL7935(9 genes,8 taxa):Populus trichocarpaPOPTR_0018s06260.1
ORTHOMCL7935(9 genes,8 taxa):Populus trichocarpaPOPTR_0130s00220.1
ORTHOMCL7935(9 genes,8 taxa):Sorghum bicolorSb03g003820.1
ORTHOMCL7935(9 genes,8 taxa):Carica papayaevm.TU.supercontig_23.124
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25403046..25923775 (-)A.thalianaChr4:7758610..8120358 (+)11
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:25161742..27330783 (+)B.rapaA07:7171993..9662044 (+)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G2435088376468839582Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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