Basic Information |
Gene Model: | Bol042377 |
Gene Family: | Transcription Factor Families |
Chromosome: | C07 |
Scaffold: | Scaffold000008_P2 |
Sequence: | |
Gene Structure |
|
Nucleotide Length: | 687 bp |
Transcript Length: | 687 bp |
Protein Length: | 228 aa |
Strand: | - |
Location: | C07: 44637714 : 44638400 |
Gene CDSs(1): | 1-687 | |
Protein Sequence Features |
Interpro |
 |
Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | HMMPfam | PF00847 | AP2 |
75 |
126 |
1.7e-19 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | Seg | seg | seg |
21 |
36 |
NA | Not found | Not found | Gene3D | G3DSA:3.30.730.10 | no description |
75 |
136 |
4.1e-24 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | HMMSmart | SM00380 | no description |
76 |
139 |
2.3e-36 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | superfamily | SSF54171 | DNA-binding domain |
75 |
136 |
2.6e-24 | IPR016177 | DNA-binding, integrase-type | ProfileScan | PS51032 | AP2_ERF |
76 |
133 |
23.064 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | |
Gene Ontology |
GO Term | GO Type | Description |
GO:0003677 |
Molecular Function |
DNA binding | GO:0003700 |
Molecular Function |
sequence-specific DNA binding transcription factor activity | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent |
|
Swiss-Prot |
Best Hit | E_value |
Description | Q9M0J3 | 4e-82 | ERF54_ARATH Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1 |
|
TrEMBL |
Best Hit | E_value |
Description | B9RW30 | 2e-36 | B9RW30_RICCO Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175560 PE=4 SV=1 |
|
KEGG |
|
Gene Cluster |
Orthologs |
OrthoMCL Group | Species | Gene List | ORTHOMCL27490(2 genes,2 taxa): | Brassica oleracea | Bol042377 | ORTHOMCL27490(2 genes,2 taxa): | Brassica rapa | Bra024222 |
|
Tandem Duplication |
|
Synteny Analysis |
Synteny Genes |
Compared to A.thaliana |
Compared to B.rapa |
Synteny Regions |
|
|
Trplicated Block |
Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|