| Basic Information |
| Gene Model: | Bol042377 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | C07 |
| Scaffold: | Scaffold000008_P2 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 687 bp |
| Transcript Length: | 687 bp |
| Protein Length: | 228 aa |
| Strand: | - |
| Location: | C07: 44637714 : 44638400 |
| Gene CDSs(1): | 1-687 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | HMMPfam | PF00847 | AP2 |
75 |
126 |
1.7e-19 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | Seg | seg | seg |
21 |
36 |
NA | Not found | Not found | | Gene3D | G3DSA:3.30.730.10 | no description |
75 |
136 |
4.1e-24 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | HMMSmart | SM00380 | no description |
76 |
139 |
2.3e-36 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | superfamily | SSF54171 | DNA-binding domain |
75 |
136 |
2.6e-24 | IPR016177 | DNA-binding, integrase-type | | ProfileScan | PS51032 | AP2_ERF |
76 |
133 |
23.064 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0003677 |
Molecular Function |
DNA binding | | GO:0003700 |
Molecular Function |
sequence-specific DNA binding transcription factor activity | | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q9M0J3 | 4e-82 | ERF54_ARATH Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | B9RW30 | 2e-36 | B9RW30_RICCO Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175560 PE=4 SV=1 |
|
| KEGG |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL27490(2 genes,2 taxa): | Brassica oleracea | Bol042377 | | ORTHOMCL27490(2 genes,2 taxa): | Brassica rapa | Bra024222 |
|
| Tandem Duplication |
|
| Synteny Analysis |
| Synteny Genes |
| Compared to A.thaliana |
Compared to B.rapa |
| Synteny Regions |
|
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|
