Basic Information
Gene Model:Bol042377
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000008_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:687 bp
Transcript Length:687 bp
Protein Length:228 aa
Strand:-
Location:C07: 44637714 : 44638400
Gene CDSs(1): 1-687 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 75 126 1.7e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 21 36 NANot foundNot found
Gene3DG3DSA:3.30.730.10no description 75 136 4.1e-24IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 76 139 2.3e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 75 136 2.6e-24IPR016177DNA-binding, integrase-type
ProfileScanPS51032AP2_ERF 76 133 23.064IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9M0J34e-82ERF54_ARATH Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RW302e-36B9RW30_RICCO Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175560 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G281405e-82K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27490(2 genes,2 taxa):Brassica oleraceaBol042377
ORTHOMCL27490(2 genes,2 taxa):Brassica rapaBra024222
Tandem Duplication
ClusterGene Num.Gene List
Cluster_13802Bol042376 Bol042377 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:43412797..46336729 (+)B.rapaA08:3942692..5662708 (-)127
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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