Basic Information
Gene Model:Bol042145
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000008_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:3796 bp
Transcript Length:2487 bp
Protein Length:828 aa
Strand:+
Location:C07: 43347908 : 43351703
Gene CDSs(5): 1-337 | 698-879 | 1667-1714 | 1800-2691 | 2769-3796 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 115 118 NANot foundNot found
Segsegseg 449 463 NANot foundNot found
Segsegseg 700 709 NANot foundNot found
Segsegseg 26 36 NANot foundNot found
HMMPfamPF00564PB1 732 814 3.5e-29IPR000270Octicosapeptide/Phox/Bem1p
HMMPfamPF02042RWP-RK 461 512 9.5e-29IPR003035Plant regulator RWP-RK
HMMSmartSM00666no description 732 814 1.2e-27IPR000270Octicosapeptide/Phox/Bem1p
superfamilySSF54277CAD & PB1 domains 727 814 4.8e-27Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
O229870.0O22987_ARATH T19F6.16 protein OS=Arabidopsis thaliana GN=AT4g24020 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2913(13 genes,7 taxa):Arabidopsis thalianaAT1G64530.1
ORTHOMCL2913(13 genes,7 taxa):Arabidopsis thalianaAT4G24020.1
ORTHOMCL2913(13 genes,7 taxa):Brassica oleraceaBol009587
ORTHOMCL2913(13 genes,7 taxa):Brassica oleraceaBol022680
ORTHOMCL2913(13 genes,7 taxa):Brassica oleraceaBol042145
ORTHOMCL2913(13 genes,7 taxa):Brassica rapaBra013754
ORTHOMCL2913(13 genes,7 taxa):Brassica rapaBra019251
ORTHOMCL2913(13 genes,7 taxa):Brassica rapaBra040914
ORTHOMCL2913(13 genes,7 taxa):Vitis viniferaGSVIVT01019600001
ORTHOMCL2913(13 genes,7 taxa):Oryza sativaOs01t0236700-01
ORTHOMCL2913(13 genes,7 taxa):Populus trichocarpaPOPTR_0001s10970.1
ORTHOMCL2913(13 genes,7 taxa):Populus trichocarpaPOPTR_0003s14300.1
ORTHOMCL2913(13 genes,7 taxa):Sorghum bicolorSb03g000490.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42842768..43444475 (+)B.rapaA09:17155548..17920104 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G240201247975212483993Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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