Basic Information
Gene Model:Bol042118
Gene Family:Antiporter Super Family
Chromosome:C07
Scaffold:Scaffold000008_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:3755 bp
Transcript Length:2472 bp
Protein Length:823 aa
Strand:-
Location:C07: 43159681 : 43163435
Gene CDSs(3): 1-1278 | 1424-2425 | 3564-3755 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00999Na_H_Exchanger 37 424 3.2e-85IPR006153Cation/H+ exchanger
Segsegseg 93 112 NANot foundNot found
Segsegseg 193 214 NANot foundNot found
Segsegseg 776 792 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0015299 Molecular Function solute:hydrogen antiporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
O229202e-91CHX13_ARATH K(+)/H(+) antiporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1
TrEMBL
Best HitE_value Description
B2WS660.0B2WS66_ARAHA Putative cation/hydrogen exchanger OS=Arabidopsis halleri GN=8F2.5 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL71(77 genes,8 taxa):Arabidopsis thalianaAT1G05580.1
ORTHOMCL71(77 genes,8 taxa):Arabidopsis thalianaAT1G64170.1
ORTHOMCL71(77 genes,8 taxa):Arabidopsis thalianaAT2G13620.1
ORTHOMCL71(77 genes,8 taxa):Arabidopsis thalianaAT2G31910.1
ORTHOMCL71(77 genes,8 taxa):Arabidopsis thalianaAT3G17630.1
ORTHOMCL71(77 genes,8 taxa):Arabidopsis thalianaAT3G53720.1
ORTHOMCL71(77 genes,8 taxa):Arabidopsis thalianaAT4G23700.1
ORTHOMCL71(77 genes,8 taxa):Arabidopsis thalianaAT5G41610.1
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol005378
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol006436
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol006437
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol009616
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol012420
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol014576
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol016355
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol019327
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol021034
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol022924
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol025142
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol025560
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol041001
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol041705
ORTHOMCL71(77 genes,8 taxa):Brassica oleraceaBol042118
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra001672
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra003153
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra003154
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra005186
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra010543
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra013724
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra015442
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra019276
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra021760
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra021761
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra025485
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra027682
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra037212
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra039813
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra039815
ORTHOMCL71(77 genes,8 taxa):Brassica rapaBra040805
ORTHOMCL71(77 genes,8 taxa):Vitis viniferaGSVIVT01017721001
ORTHOMCL71(77 genes,8 taxa):Vitis viniferaGSVIVT01019454001
ORTHOMCL71(77 genes,8 taxa):Vitis viniferaGSVIVT01019458001
ORTHOMCL71(77 genes,8 taxa):Vitis viniferaGSVIVT01019459001
ORTHOMCL71(77 genes,8 taxa):Vitis viniferaGSVIVT01021420001
ORTHOMCL71(77 genes,8 taxa):Vitis viniferaGSVIVT01026473001
ORTHOMCL71(77 genes,8 taxa):Vitis viniferaGSVIVT01034209001
ORTHOMCL71(77 genes,8 taxa):Vitis viniferaGSVIVT01034211001
ORTHOMCL71(77 genes,8 taxa):Oryza sativaOs01t0817400-00
ORTHOMCL71(77 genes,8 taxa):Oryza sativaOs03t0828600-00
ORTHOMCL71(77 genes,8 taxa):Oryza sativaOs05t0113300-01
ORTHOMCL71(77 genes,8 taxa):Oryza sativaOs05t0276100-01
ORTHOMCL71(77 genes,8 taxa):Oryza sativaOs05t0485000-01
ORTHOMCL71(77 genes,8 taxa):Oryza sativaOs11t0123600-00
ORTHOMCL71(77 genes,8 taxa):Oryza sativaOs12t0121600-01
ORTHOMCL71(77 genes,8 taxa):Oryza sativaOs12t0616500-00
ORTHOMCL71(77 genes,8 taxa):Populus trichocarpaPOPTR_0001s10170.1
ORTHOMCL71(77 genes,8 taxa):Populus trichocarpaPOPTR_0003s13470.1
ORTHOMCL71(77 genes,8 taxa):Populus trichocarpaPOPTR_0004s13620.1
ORTHOMCL71(77 genes,8 taxa):Populus trichocarpaPOPTR_0007s03660.1
ORTHOMCL71(77 genes,8 taxa):Populus trichocarpaPOPTR_0007s04230.1
ORTHOMCL71(77 genes,8 taxa):Populus trichocarpaPOPTR_0010s00740.1
ORTHOMCL71(77 genes,8 taxa):Populus trichocarpaPOPTR_0271s00200.1
ORTHOMCL71(77 genes,8 taxa):Sorghum bicolorSb01g002640.1
ORTHOMCL71(77 genes,8 taxa):Sorghum bicolorSb03g038000.1
ORTHOMCL71(77 genes,8 taxa):Sorghum bicolorSb05g001490.1
ORTHOMCL71(77 genes,8 taxa):Sorghum bicolorSb08g021720.1
ORTHOMCL71(77 genes,8 taxa):Sorghum bicolorSb08g021730.1
ORTHOMCL71(77 genes,8 taxa):Sorghum bicolorSb09g008200.1
ORTHOMCL71(77 genes,8 taxa):Sorghum bicolorSb09g023730.1
ORTHOMCL71(77 genes,8 taxa):Carica papayaevm.TU.supercontig_122.14
ORTHOMCL71(77 genes,8 taxa):Carica papayaevm.TU.supercontig_136.51
ORTHOMCL71(77 genes,8 taxa):Carica papayaevm.TU.supercontig_188.16
ORTHOMCL71(77 genes,8 taxa):Carica papayaevm.TU.supercontig_20.198
ORTHOMCL71(77 genes,8 taxa):Carica papayaevm.TU.supercontig_20.199
ORTHOMCL71(77 genes,8 taxa):Carica papayaevm.TU.supercontig_228.21
ORTHOMCL71(77 genes,8 taxa):Carica papayaevm.TU.supercontig_321.7
ORTHOMCL71(77 genes,8 taxa):Carica papayaevm.TU.supercontig_46.170
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42838320..43290070 (-)A.thalianaChr4:6713557..6967093 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42842768..43444475 (+)B.rapaA09:17155548..17920104 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G237001234242812346043Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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