Basic Information
Gene Model:Bol042039
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000008_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:6262 bp
Transcript Length:657 bp
Protein Length:218 aa
Strand:-
Location:C07: 42446575 : 42452836
Gene CDSs(6): 1-159 | 2425-2483 | 2597-2746 | 2845-2937 | 5696-5806 | 6178-6262 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.2020no description 6 170 8.4e-56Not foundNot found
superfamilySSF53271PRTase-like 6 179 4.8e-56Not foundNot found
HMMPfamPF00156Pribosyltran 36 160 7.2e-46IPR000836Phosphoribosyltransferase
HMMPantherPTHR10210RIBOSE-PHOSPHATE PYR 123 159 0.0005Not foundNot found
HMMPantherPTHR10210:SF3RIBOSE-PHOSPHATE PYR 123 159 0.0005Not foundNot found
HMMTigrTIGR01090apt: adenine phospho 15 187 9.6e-79IPR005764Adenine phosphoribosyl transferase
HAMAPMF_00004APT_MF_00004 13 187 32.064IPR005764Adenine phosphoribosyl transferase
Gene Ontology
GO TermGO TypeDescription
GO:0003999 Molecular Function adenine phosphoribosyltransferase activity
GO:0006168 Biological Process adenine salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
P311663e-70APT1_ARATH Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9SUW21e-86Q9SUW2_ARATH Adenine phosphoribosyltransferase (EC 2.4.2.7)-like protein OS=Arabidopsis thaliana GN=AT4g22570 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G225701e-87K00759E2.4.2.7, aptadenine phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11821(7 genes,6 taxa):Arabidopsis thalianaAT4G22570.1
ORTHOMCL11821(7 genes,6 taxa):Brassica oleraceaBol042039
ORTHOMCL11821(7 genes,6 taxa):Brassica rapaBra019374
ORTHOMCL11821(7 genes,6 taxa):Oryza sativaOs07t0484800-01
ORTHOMCL11821(7 genes,6 taxa):Populus trichocarpaPOPTR_0001s00360.1
ORTHOMCL11821(7 genes,6 taxa):Populus trichocarpaPOPTR_0001s00360.2
ORTHOMCL11821(7 genes,6 taxa):Carica papayaevm.TU.supercontig_29.132
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42273633..42709945 (-)A.thalianaChr4:7093542..7462253 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42294492..43067676 (+)B.rapaA09:32022412..32792028 (-)13
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G225701188212611885421Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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