Basic Information
Gene Model:Bol042022
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000008_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2330 bp
Transcript Length:1158 bp
Protein Length:385 aa
Strand:+
Location:Scaffold000008_P1: 1432229 : 1434558
Gene CDSs(7): 1-188 | 417-479 | 637-753 | 1291-1558 | 1646-1804 | 1888-2039 | 2120-2330 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 203 332 1.3e-07IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 20 153 2.1e-13IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 228 339 2e-10Not foundNot found
superfamilySSF103481Multidrug resistance 45 160 7.3e-10Not foundNot found
PatternScanPS00579RIBOSOMAL_L29 38 52 NAIPR018254Ribosomal protein L29, conserved site
Segsegseg 165 186 NANot foundNot found
Segsegseg 97 108 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003735 Molecular Function structural constituent of ribosome
GO:0005622 Cellular Component intracellular
GO:0005840 Cellular Component ribosome
GO:0006412 Biological Process translation
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1634e-595NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8VZ540.0Q8VZ54_ARATH Putative nodulin protein OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2839(13 genes,7 taxa):Arabidopsis thalianaAT1G21890.1
ORTHOMCL2839(13 genes,7 taxa):Arabidopsis thalianaAT4G08300.1
ORTHOMCL2839(13 genes,7 taxa):Brassica oleraceaBol001388
ORTHOMCL2839(13 genes,7 taxa):Brassica oleraceaBol009693
ORTHOMCL2839(13 genes,7 taxa):Brassica oleraceaBol042022
ORTHOMCL2839(13 genes,7 taxa):Brassica rapaBra010139
ORTHOMCL2839(13 genes,7 taxa):Brassica rapaBra012297
ORTHOMCL2839(13 genes,7 taxa):Vitis viniferaGSVIVT01008888001
ORTHOMCL2839(13 genes,7 taxa):Populus trichocarpaPOPTR_0002s08560.1
ORTHOMCL2839(13 genes,7 taxa):Populus trichocarpaPOPTR_0005s15810.1
ORTHOMCL2839(13 genes,7 taxa):Sorghum bicolorSb0012s002110.1
ORTHOMCL2839(13 genes,7 taxa):Carica papayaevm.TU.supercontig_36.45
ORTHOMCL2839(13 genes,7 taxa):Carica papayaevm.TU.supercontig_36.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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