Basic Information
Gene Model:Bol041992
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000008_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1152 bp
Transcript Length:735 bp
Protein Length:244 aa
Strand:-
Location:Scaffold000008_P1: 995963 : 997114
Gene CDSs(4): 1-182 | 266-542 | 751-990 | 1117-1152 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00332no description 29 244 2.1e-49IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 32 238 9.5e-45IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 15 30 NANot foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 10 238 5.3e-81IPR015655Protein phosphatase 2C
Gene3DG3DSA:3.60.40.10no description 30 238 5.1e-48IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 12 238 2.8e-52IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LME41e-122P2C09_ARATH Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9H7301e-107B9H730_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1078275 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
aga:AgaP_AGAP0022663e-26K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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