| Basic Information |
| Gene Model: | Bol041974 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | Cun |
| Scaffold: | Scaffold000008_P1 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 1518 bp |
| Transcript Length: | 849 bp |
| Protein Length: | 282 aa |
| Strand: | + |
| Location: | Scaffold000008_P1: 786868 : 788385 |
| Gene CDSs(3): | 1-441 | 1054-1437 | 1495-1518 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | Gene3D | G3DSA:4.10.280.10 | no description |
109 |
172 |
3.4e-05 | IPR011598 | Helix-loop-helix DNA-binding | | superfamily | SSF47459 | HLH, helix-loop-heli |
103 |
182 |
1.3e-15 | IPR011598 | Helix-loop-helix DNA-binding | | ProfileScan | PS50888 | HLH |
96 |
165 |
13.072 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | HMMPfam | PF00010 | HLH |
114 |
165 |
3e-16 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | HMMSmart | SM00353 | no description |
119 |
170 |
2.4e-10 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | Seg | seg | seg |
176 |
189 |
NA | Not found | Not found | | Seg | seg | seg |
204 |
216 |
NA | Not found | Not found | | Seg | seg | seg |
96 |
103 |
NA | Not found | Not found | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0005634 |
Cellular Component |
nucleus | | GO:0030528 |
Molecular Function |
transcription regulator activity | | GO:0045449 |
Biological Process |
regulation of transcription |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q9SK91 | 1e-113 | BH094_ARATH Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | A7NUT0 | 3e-57 | A7NUT0_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015166001 PE=4 SV=1 |
|
| KEGG |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL27440(2 genes,2 taxa): | Brassica oleracea | Bol041974 | | ORTHOMCL27440(2 genes,2 taxa): | Brassica rapa | Bra012329 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Note: This gene was not anchored on pseudo-chromosomes. |
| Synteny Regions |
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|
