Basic Information
Gene Model:Bol041974
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000008_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1518 bp
Transcript Length:849 bp
Protein Length:282 aa
Strand:+
Location:Scaffold000008_P1: 786868 : 788385
Gene CDSs(3): 1-441 | 1054-1437 | 1495-1518 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:4.10.280.10no description 109 172 3.4e-05IPR011598Helix-loop-helix DNA-binding
superfamilySSF47459HLH, helix-loop-heli 103 182 1.3e-15IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 96 165 13.072IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 114 165 3e-16IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 119 170 2.4e-10IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 176 189 NANot foundNot found
Segsegseg 204 216 NANot foundNot found
Segsegseg 96 103 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9SK911e-113BH094_ARATH Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7NUT03e-57A7NUT0_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015166001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_08644701e-09K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27440(2 genes,2 taxa):Brassica oleraceaBol041974
ORTHOMCL27440(2 genes,2 taxa):Brassica rapaBra012329
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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