Basic Information |
Gene Model: | Bol041974 |
Gene Family: | Transcription Factor Families |
Chromosome: | Cun |
Scaffold: | Scaffold000008_P1 |
Sequence: | |
Gene Structure |
|
Nucleotide Length: | 1518 bp |
Transcript Length: | 849 bp |
Protein Length: | 282 aa |
Strand: | + |
Location: | Scaffold000008_P1: 786868 : 788385 |
Gene CDSs(3): | 1-441 | 1054-1437 | 1495-1518 | |
Protein Sequence Features |
Interpro |
 |
Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | Gene3D | G3DSA:4.10.280.10 | no description |
109 |
172 |
3.4e-05 | IPR011598 | Helix-loop-helix DNA-binding | superfamily | SSF47459 | HLH, helix-loop-heli |
103 |
182 |
1.3e-15 | IPR011598 | Helix-loop-helix DNA-binding | ProfileScan | PS50888 | HLH |
96 |
165 |
13.072 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | HMMPfam | PF00010 | HLH |
114 |
165 |
3e-16 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | HMMSmart | SM00353 | no description |
119 |
170 |
2.4e-10 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | Seg | seg | seg |
176 |
189 |
NA | Not found | Not found | Seg | seg | seg |
204 |
216 |
NA | Not found | Not found | Seg | seg | seg |
96 |
103 |
NA | Not found | Not found | |
Gene Ontology |
GO Term | GO Type | Description |
GO:0005634 |
Cellular Component |
nucleus | GO:0030528 |
Molecular Function |
transcription regulator activity | GO:0045449 |
Biological Process |
regulation of transcription |
|
Swiss-Prot |
Best Hit | E_value |
Description | Q9SK91 | 1e-113 | BH094_ARATH Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2 |
|
TrEMBL |
Best Hit | E_value |
Description | A7NUT0 | 3e-57 | A7NUT0_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015166001 PE=4 SV=1 |
|
KEGG |
|
Gene Cluster |
Orthologs |
OrthoMCL Group | Species | Gene List | ORTHOMCL27440(2 genes,2 taxa): | Brassica oleracea | Bol041974 | ORTHOMCL27440(2 genes,2 taxa): | Brassica rapa | Bra012329 |
|
Tandem Duplication |
Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
Synteny Analysis |
Synteny Genes |
Note: This gene was not anchored on pseudo-chromosomes. |
Synteny Regions |
Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
Trplicated Block |
Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|