Basic Information
Gene Model:Bol041940
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000008_P1
Sequence:
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Gene Structure
Nucleotide Length:3097 bp
Transcript Length:1008 bp
Protein Length:335 aa
Strand:+
Location:Scaffold000008_P1: 356741 : 359837
Gene CDSs(6): 1-258 | 359-529 | 682-747 | 1100-1165 | 2087-2143 | 2708-3097 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00353no description 139 188 4e-14IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 134 183 3.8e-10IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 140 152 NANot foundNot found
Segsegseg 207 221 NANot foundNot found
Segsegseg 89 106 NANot foundNot found
ProfileScanPS50888HLH 127 183 13.546IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 129 209 9.5e-05IPR011598Helix-loop-helix DNA-binding
superfamilySSF47459HLH, helix-loop-heli 131 215 2.5e-15IPR011598Helix-loop-helix DNA-binding
HMMPantherPTHR10014BASIC HELIX-LOOP-HEL 125 183 5.8e-05Not foundNot found
HMMPantherPTHR10014:SF13TRANSCRIPTION FACTOR 125 183 5.8e-05Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9ZUG91e-134BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SVK81e-94C0SVK8_ARATH Putative uncharacterized protein At4g30980 (Fragment) OS=Arabidopsis thaliana GN=At4g30980 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G095307e-18K12126PIF3phytochrome-interacting factor 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4658(11 genes,7 taxa):Arabidopsis thalianaAT2G24260.1
ORTHOMCL4658(11 genes,7 taxa):Brassica oleraceaBol041940
ORTHOMCL4658(11 genes,7 taxa):Brassica oleraceaBol045781
ORTHOMCL4658(11 genes,7 taxa):Brassica rapaBra007863
ORTHOMCL4658(11 genes,7 taxa):Brassica rapaBra032111
ORTHOMCL4658(11 genes,7 taxa):Vitis viniferaGSVIVT01023585001
ORTHOMCL4658(11 genes,7 taxa):Populus trichocarpaPOPTR_0006s20070.1
ORTHOMCL4658(11 genes,7 taxa):Populus trichocarpaPOPTR_0018s11800.1
ORTHOMCL4658(11 genes,7 taxa):Sorghum bicolorSb02g024750.1
ORTHOMCL4658(11 genes,7 taxa):Sorghum bicolorSb04g035890.1
ORTHOMCL4658(11 genes,7 taxa):Carica papayaevm.TU.contig_30708.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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