| Basic Information |
| Gene Model: | Bol041940 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | Cun |
| Scaffold: | Scaffold000008_P1 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 3097 bp |
| Transcript Length: | 1008 bp |
| Protein Length: | 335 aa |
| Strand: | + |
| Location: | Scaffold000008_P1: 356741 : 359837 |
| Gene CDSs(6): | 1-258 | 359-529 | 682-747 | 1100-1165 | 2087-2143 | 2708-3097 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | HMMSmart | SM00353 | no description |
139 |
188 |
4e-14 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | HMMPfam | PF00010 | HLH |
134 |
183 |
3.8e-10 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | Seg | seg | seg |
140 |
152 |
NA | Not found | Not found | | Seg | seg | seg |
207 |
221 |
NA | Not found | Not found | | Seg | seg | seg |
89 |
106 |
NA | Not found | Not found | | ProfileScan | PS50888 | HLH |
127 |
183 |
13.546 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | Gene3D | G3DSA:4.10.280.10 | no description |
129 |
209 |
9.5e-05 | IPR011598 | Helix-loop-helix DNA-binding | | superfamily | SSF47459 | HLH, helix-loop-heli |
131 |
215 |
2.5e-15 | IPR011598 | Helix-loop-helix DNA-binding | | HMMPanther | PTHR10014 | BASIC HELIX-LOOP-HEL |
125 |
183 |
5.8e-05 | Not found | Not found | | HMMPanther | PTHR10014:SF13 | TRANSCRIPTION FACTOR |
125 |
183 |
5.8e-05 | Not found | Not found | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0005634 |
Cellular Component |
nucleus | | GO:0030528 |
Molecular Function |
transcription regulator activity | | GO:0045449 |
Biological Process |
regulation of transcription |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q9ZUG9 | 1e-134 | BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | C0SVK8 | 1e-94 | C0SVK8_ARATH Putative uncharacterized protein At4g30980 (Fragment) OS=Arabidopsis thaliana GN=At4g30980 PE=2 SV=1 |
|
| KEGG |
| Best Hit | E_value | KO | EC or Symbol |
Description | | ath:AT1G09530 | 7e-18 | K12126 | PIF3 | phytochrome-interacting factor 3 |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL4658(11 genes,7 taxa): | Arabidopsis thaliana | AT2G24260.1 | | ORTHOMCL4658(11 genes,7 taxa): | Brassica oleracea | Bol041940 | | ORTHOMCL4658(11 genes,7 taxa): | Brassica oleracea | Bol045781 | | ORTHOMCL4658(11 genes,7 taxa): | Brassica rapa | Bra007863 | | ORTHOMCL4658(11 genes,7 taxa): | Brassica rapa | Bra032111 | | ORTHOMCL4658(11 genes,7 taxa): | Vitis vinifera | GSVIVT01023585001 | | ORTHOMCL4658(11 genes,7 taxa): | Populus trichocarpa | POPTR_0006s20070.1 | | ORTHOMCL4658(11 genes,7 taxa): | Populus trichocarpa | POPTR_0018s11800.1 | | ORTHOMCL4658(11 genes,7 taxa): | Sorghum bicolor | Sb02g024750.1 | | ORTHOMCL4658(11 genes,7 taxa): | Sorghum bicolor | Sb04g035890.1 | | ORTHOMCL4658(11 genes,7 taxa): | Carica papaya | evm.TU.contig_30708.1 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Note: This gene was not anchored on pseudo-chromosomes. |
| Synteny Regions |
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|
