Basic Information
Gene Model:Bol041925
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000008_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:528 bp
Transcript Length:528 bp
Protein Length:175 aa
Strand:+
Location:Scaffold000008_P1: 202833 : 203360
Gene CDSs(1): 1-528 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 34 49 NANot foundNot found
HMMPfamPF02519Auxin_inducible 65 127 9.9e-31IPR003676Auxin responsive SAUR protein
Coilcoilcoiled-coil 5 26 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P330827e-10AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZQ286e-80Q9ZQ28_ARATH Putative auxin-regulated protein OS=Arabidopsis thaliana GN=At2g24400 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G244008e-81K14488SAURSAUR family protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15456(4 genes,4 taxa):Arabidopsis thalianaAT2G24400.1
ORTHOMCL15456(4 genes,4 taxa):Brassica oleraceaBol041925
ORTHOMCL15456(4 genes,4 taxa):Brassica rapaBra032097
ORTHOMCL15456(4 genes,4 taxa):Populus trichocarpaPOPTR_0006s29280.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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