Basic Information
Gene Model:Bol041904
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000008_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1131 bp
Transcript Length:807 bp
Protein Length:268 aa
Strand:+
Location:Scaffold000008_P1: 22806 : 23936
Gene CDSs(4): 1-201 | 311-691 | 767-985 | 1126-1131 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 204 217 NANot foundNot found
Segsegseg 35 42 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 42 132 0.00021Not foundNot found
ProfileScanPS50863B3 179 268 12.224IPR003340Transcriptional factor B3
ProfileScanPS50863B3 52 148 13.831IPR003340Transcriptional factor B3
HMMPfamPF02362B3 188 265 8.4e-15IPR003340Transcriptional factor B3
HMMPfamPF02362B3 52 148 2.4e-28IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
P0CAP43e-71REM12_ARATH B3 domain-containing protein REM12 OS=Arabidopsis thaliana GN=REM12 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8S8E83e-34Q8S8E8_ARATH Putative uncharacterized protein At2g24690 OS=Arabidopsis thaliana GN=At2g24690 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27430(2 genes,2 taxa):Brassica oleraceaBol041904
ORTHOMCL27430(2 genes,2 taxa):Brassica rapaBra032076
Tandem Duplication
ClusterGene Num.Gene List
Cluster_16412Bol041903 Bol041904 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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