Basic Information
Gene Model:Bol041830
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000009_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:507 bp
Transcript Length:507 bp
Protein Length:168 aa
Strand:-
Location:C07: 16854679 : 16855185
Gene CDSs(1): 1-507 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 155 168 NANot foundNot found
Segsegseg 129 147 NANot foundNot found
Segsegseg 89 101 NANot foundNot found
Segsegseg 58 71 NANot foundNot found
HMMSmartSM00380no description 23 86 3.5e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 22 73 9.6e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 23 80 24.671IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 22 83 3.4e-24IPR016177DNA-binding, integrase-type
Gene3DG3DSA:3.30.730.10no description 22 83 2e-23IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C5I32e-44ERF76_ARATH Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q09J764e-52Q09J76_BRARP Putative ethylene-responsive element binding factor OS=Brassica rapa subsp. pekinensis PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G152104e-28K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27416(2 genes,2 taxa):Brassica oleraceaBol041830
ORTHOMCL27416(2 genes,2 taxa):Brassica rapaBra030095
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10402Bol041829 Bol041830 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:16414492..18130108 (+)A.thalianaChr2:14265450..14558697 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:16012970..17219235 (+)B.rapaA09:21495357..22436260 (+)46
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2837099559699956940Chr1Subgenome_I118
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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