Basic Information
Gene Model:Bol041825
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000009_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:4308 bp
Transcript Length:1035 bp
Protein Length:344 aa
Strand:-
Location:C07: 16755788 : 16760095
Gene CDSs(6): 1-276 | 1850-1923 | 2000-2046 | 2277-2362 | 3664-3738 | 3832-4308 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 159 170 NANot foundNot found
Segsegseg 113 125 NANot foundNot found
HMMPfamPF02362B3 164 263 3.5e-17IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 152 275 1.1e-22Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q1PFR71e-120LEC2_ARATH B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana GN=LEC2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RBC51e-43B9RBC5_RICCO Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1674130 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13791(5 genes,4 taxa):Arabidopsis thalianaAT1G28300.1
ORTHOMCL13791(5 genes,4 taxa):Brassica oleraceaBol041825
ORTHOMCL13791(5 genes,4 taxa):Brassica rapaBra030087
ORTHOMCL13791(5 genes,4 taxa):Populus trichocarpaPOPTR_0004s04560.1
ORTHOMCL13791(5 genes,4 taxa):Populus trichocarpaPOPTR_0011s05380.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:16414492..18130108 (+)A.thalianaChr2:14265450..14558697 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:16012970..17219235 (+)B.rapaA09:21495357..22436260 (+)46
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2830098968679899876Chr1Subgenome_I118
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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