Basic Information
Gene Model:Bol041646
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000009_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2490 bp
Transcript Length:669 bp
Protein Length:222 aa
Strand:+
Location:Scaffold000009_P1: 825097 : 827586
Gene CDSs(4): 1-196 | 274-457 | 1991-2066 | 2278-2490 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00957Synaptobrevin 152 216 9.9e-27IPR001388Synaptobrevin
Gene3DG3DSA:1.20.5.110no description 152 195 2.3e-11Not foundNot found
Segsegseg 102 114 NANot foundNot found
ProfileScanPS50892V_SNARE 131 191 10.374IPR001388Synaptobrevin
ProfileScanPS50859LONGIN 7 130 23.358IPR010908Longin
superfamilySSF64356SNARE-like 6 111 1.5e-21IPR011012Longin-like
HMMPantherPTHR21136SNARE PROTEINS 11 222 1.8e-116Not foundNot found
HMMPantherPTHR21136:SF8VAMP-7 11 222 1.8e-116Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9M3762e-94VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HKP09e-85B9HKP0_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_820204 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G543003e-94K08511ATVAMP72vesicle-associated membrane protein 72
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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