Basic Information
Gene Model:Bol041498
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000010
Sequence:
 | 
Gene Structure
Nucleotide Length:609 bp
Transcript Length:609 bp
Protein Length:202 aa
Strand:-
Location:C07: 10605050 : 10605658
Gene CDSs(1): 1-609 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00914SYNTAXIN 113 152 NAIPR006012Syntaxin/epimorphin, conserved site
HMMPantherPTHR19957:SF26SYNTAXIN, ARABIDOPSI 1 137 1.4e-57Not foundNot found
HMMPantherPTHR19957SYNTAXIN 1 137 1.4e-57Not foundNot found
HMMSmartSM00397no description 102 169 1.8e-10IPR000727Target SNARE coiled-coil region
Gene3DG3DSA:1.20.1050.30no description 1 162 7.2e-27Not foundNot found
Segsegseg 180 196 NANot foundNot found
ProfileScanPS50192T_SNARE 107 169 16.067IPR000727Target SNARE coiled-coil region
superfamilySSF47661t-snare proteins 1 162 2.2e-26IPR010989t-SNARE
HMMPfamPF05739SNARE 112 174 4.9e-17IPR000727Target SNARE coiled-coil region
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9ZPV92e-96SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9S6E51e-60B9S6E5_RICCO Syntaxin, putative OS=Ricinus communis GN=RCOM_0535810 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G182603e-96K08486STX1B_2_3syntaxin 1B/2/3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:7024430..15971850 (-)A.thalianaChr2:6385872..8577947 (+)210
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:10404912..11801307 (+)B.rapaA09:18489060..18725445 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1826079422757943388Chr2Subgenome_III(LF)95
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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