Basic Information
Gene Model:Bol041372
Gene Family:ARIADNE Gene Families
Chromosome:C03
Scaffold:Scaffold000011
Sequence:
 | 
Gene Structure
Nucleotide Length:1440 bp
Transcript Length:1362 bp
Protein Length:453 aa
Strand:-
Location:C03: 35502125 : 35503564
Gene CDSs(2): 1-550 | 629-1440 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01485IBR 151 221 2.1e-17IPR002867Zinc finger, C6HC-type
HMMPfamPF01485IBR 230 291 0.012IPR002867Zinc finger, C6HC-type
Segsegseg 268 281 NANot foundNot found
Segsegseg 182 196 NANot foundNot found
HMMSmartSM00647no description 230 291 0.4IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 151 221 3.3e-18IPR002867Zinc finger, C6HC-type
superfamilySSF57850RING/U-box 240 298 1.5e-08Not foundNot found
HMMPantherPTHR11685:SF9ARI-LIKE RING ZINC F 46 452 4.9e-132Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 46 452 4.9e-132Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9C5A41e-130ARI16_ARATH Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana GN=ARI16 PE=2 SV=1
TrEMBL
Best HitE_value Description
C5YBD51e-55C5YBD5_SORBI Putative uncharacterized protein Sb06g021080 OS=Sorghum bicolor GN=Sb06g021080 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_7414502e-55K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL20189(3 genes,2 taxa):Brassica oleraceaBol041372
ORTHOMCL20189(3 genes,2 taxa):Brassica rapaBra018221
ORTHOMCL20189(3 genes,2 taxa):Brassica rapaBra038276
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:34916112..36126669 (-)A.thalianaChr5:24003888..24260043 (+)13
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:34027832..36299190 (+)B.rapaA10:8012747..8881908 (+)20
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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