Basic Information
Gene Model:Bol041360
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000011
Sequence:
 | 
Gene Structure
Nucleotide Length:1596 bp
Transcript Length:1155 bp
Protein Length:384 aa
Strand:+
Location:C03: 35329436 : 35331031
Gene CDSs(6): 1-242 | 321-437 | 531-816 | 912-1067 | 1140-1291 | 1395-1596 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 226 334 6.9e-13IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 17 150 1.4e-10IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 42 153 9.9e-10Not foundNot found
superfamilySSF103481Multidrug resistance 231 341 1.7e-12Not foundNot found
Segsegseg 70 84 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1639e-605NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q5PP320.0Q5PP32_ARATH At3g45870 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15645(4 genes,4 taxa):Arabidopsis thalianaAT3G45870.1
ORTHOMCL15645(4 genes,4 taxa):Brassica oleraceaBol041360
ORTHOMCL15645(4 genes,4 taxa):Brassica rapaBra038272
ORTHOMCL15645(4 genes,4 taxa):Vitis viniferaGSVIVT01036865001
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:34916112..36126669 (-)A.thalianaChr5:24003888..24260043 (+)13
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:34027832..36299190 (+)B.rapaA10:8012747..8881908 (+)20
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
MAT3G458701686720216868926Chr3Subgenome_III(LF)117
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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