Basic Information
Gene Model:Bol041203
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:5053 bp
Transcript Length:1437 bp
Protein Length:478 aa
Strand:-
Location:C05: 3025179 : 3030231
Gene CDSs(12): 1-88 | 187-329 | 1111-1332 | 1473-1744 | 1860-1908 | 2008-2085 | 2361-2420 | 2600-2638 | 3246-3467 | 3830-3912 | 4424-4518 | 4968-5053 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00338no description 171 248 7.2e-07IPR004827Basic-leucine zipper (bZIP) transcription factor
ProfileScanPS50217BZIP 173 217 9.289IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 194 222 NANot foundNot found
Segsegseg 436 449 NANot foundNot found
Segsegseg 353 370 NANot foundNot found
Segsegseg 134 145 NANot foundNot found
Segsegseg 88 103 NANot foundNot found
Segsegseg 4 22 NANot foundNot found
HMMPfamPF00170bZIP_1 173 202 1e-08IPR011616bZIP transcription factor, bZIP-1
PatternScanPS00036BZIP_BASIC 178 193 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
O241601e-106TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q93XM60.0Q93XM6_ARATH BZIP transcription factor OS=Arabidopsis thaliana GN=AtbZIP21 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G083200.0K14431TGAtranscription factor TGA
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1650(16 genes,8 taxa):Arabidopsis thalianaAT1G08320.1
ORTHOMCL1650(16 genes,8 taxa):Brassica oleraceaBol006544
ORTHOMCL1650(16 genes,8 taxa):Brassica oleraceaBol041203
ORTHOMCL1650(16 genes,8 taxa):Brassica rapaBra018634
ORTHOMCL1650(16 genes,8 taxa):Brassica rapaBra031622
ORTHOMCL1650(16 genes,8 taxa):Vitis viniferaGSVIVT01036134001
ORTHOMCL1650(16 genes,8 taxa):Oryza sativaOs01t0859500-01
ORTHOMCL1650(16 genes,8 taxa):Oryza sativaOs05t0443900-01
ORTHOMCL1650(16 genes,8 taxa):Oryza sativaOs11t0152700-01
ORTHOMCL1650(16 genes,8 taxa):Oryza sativaOs11t0152700-02
ORTHOMCL1650(16 genes,8 taxa):Oryza sativaOs12t0152900-01
ORTHOMCL1650(16 genes,8 taxa):Populus trichocarpaPOPTR_0004s21360.1
ORTHOMCL1650(16 genes,8 taxa):Populus trichocarpaPOPTR_0009s16590.1
ORTHOMCL1650(16 genes,8 taxa):Sorghum bicolorSb03g040530.1
ORTHOMCL1650(16 genes,8 taxa):Sorghum bicolorSb05g003240.1
ORTHOMCL1650(16 genes,8 taxa):Carica papayaevm.TU.supercontig_32.14
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:270715..3365448 (+)A.thalianaChr1:400035..2965972 (+)419
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:2312324..3331138 (+)B.rapaA09:1175153..1754984 (+)72
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0832026219042627721Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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