Basic Information
Gene Model:Bol041128
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:1455 bp
Transcript Length:1293 bp
Protein Length:430 aa
Strand:-
Location:C05: 2550053 : 2551507
Gene CDSs(3): 1-513 | 595-906 | 988-1455 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 86 422 6.4e-76IPR001932Protein phosphatase 2C-related
Segsegseg 349 356 NANot foundNot found
Segsegseg 367 385 NANot foundNot found
Segsegseg 219 230 NANot foundNot found
Segsegseg 307 320 NANot foundNot found
Segsegseg 15 25 NANot foundNot found
Segsegseg 176 187 NANot foundNot found
superfamilySSF81606Protein serine/threo 87 423 4.3e-80IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 145 153 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPfamPF00481PP2C 107 411 3.4e-74IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00332no description 98 416 1.5e-97IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 96 427 2.7e-126IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 96 427 2.7e-126Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9LNW31e-175P2C03_ARATH Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B2BXK41e-126B2BXK4_ARALY Protein-phosphatase-2C OS=Arabidopsis lyrata subsp. lyrata GN=PPh2C PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G074301e-175K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1234(18 genes,8 taxa):Arabidopsis thalianaAT1G07430.1
ORTHOMCL1234(18 genes,8 taxa):Arabidopsis thalianaAT2G29380.1
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol004110
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol017589
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol041128
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra015579
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra018398
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra031574
ORTHOMCL1234(18 genes,8 taxa):Vitis viniferaGSVIVT01024875001
ORTHOMCL1234(18 genes,8 taxa):Oryza sativaOs01t0846300-01
ORTHOMCL1234(18 genes,8 taxa):Oryza sativaOs03t0268600-01
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.1
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.2
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.3
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0009s04210.1
ORTHOMCL1234(18 genes,8 taxa):Sorghum bicolorSb01g039890.1
ORTHOMCL1234(18 genes,8 taxa):Sorghum bicolorSb03g039630.1
ORTHOMCL1234(18 genes,8 taxa):Carica papayaevm.TU.supercontig_81.92
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:270715..3365448 (+)A.thalianaChr1:400035..2965972 (+)419
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:906012..2655941 (+)B.rapaA10:15677577..17879701 (+)243
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0743022808352282828Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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