Basic Information
Gene Model:Bol041122
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:1887 bp
Transcript Length:1500 bp
Protein Length:499 aa
Strand:+
Location:C05: 2530104 : 2531990
Gene CDSs(4): 1-133 | 226-545 | 758-1384 | 1468-1887 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11600SUGAR TRANSPORTER 5 346 6.5e-199Not foundNot found
HMMPantherPTHR11600:SF116MONOSACCHARIDE TRANS 5 346 6.5e-199Not foundNot found
ProfileScanPS50850MFS 26 474 40.813Not foundNot found
Segsegseg 486 494 NANot foundNot found
Segsegseg 132 149 NANot foundNot found
PatternScanPS00217SUGAR_TRANSPORT_2 141 166 NAIPR005829Sugar transporter, conserved site
PatternScanPS00216SUGAR_TRANSPORT_1 336 353 NAIPR005829Sugar transporter, conserved site
superfamilySSF103473MFS general substrat 76 489 9.7e-57IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF00083Sugar_tr 26 485 1.8e-142IPR005828General substrate transporter
HMMTigrTIGR00879SP: MFS transporter, 1 481 2.1e-121IPR003663Sugar/inositol transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q9LNV30.0STP2_ARATH Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3
TrEMBL
Best HitE_value Description
B2BXS10.0B2BXS1_9ROSI Putative uncharacterized protein OS=Cleome spinosa PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
dha:DEHA2C11374g7e-58K08139HXTMFS transporter, SP family, sugar:H+ symporter
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL422(29 genes,8 taxa):Arabidopsis thalianaAT1G07340.1
ORTHOMCL422(29 genes,8 taxa):Arabidopsis thalianaAT3G05960.1
ORTHOMCL422(29 genes,8 taxa):Arabidopsis thalianaAT5G26250.1
ORTHOMCL422(29 genes,8 taxa):Brassica oleraceaBol002474
ORTHOMCL422(29 genes,8 taxa):Brassica oleraceaBol002866
ORTHOMCL422(29 genes,8 taxa):Brassica oleraceaBol022297
ORTHOMCL422(29 genes,8 taxa):Brassica oleraceaBol023380
ORTHOMCL422(29 genes,8 taxa):Brassica oleraceaBol034076
ORTHOMCL422(29 genes,8 taxa):Brassica oleraceaBol041122
ORTHOMCL422(29 genes,8 taxa):Brassica rapaBra001176
ORTHOMCL422(29 genes,8 taxa):Brassica rapaBra009892
ORTHOMCL422(29 genes,8 taxa):Brassica rapaBra015575
ORTHOMCL422(29 genes,8 taxa):Brassica rapaBra020794
ORTHOMCL422(29 genes,8 taxa):Brassica rapaBra030678
ORTHOMCL422(29 genes,8 taxa):Brassica rapaBra040241
ORTHOMCL422(29 genes,8 taxa):Vitis viniferaGSVIVT01000851001
ORTHOMCL422(29 genes,8 taxa):Vitis viniferaGSVIVT01000853001
ORTHOMCL422(29 genes,8 taxa):Vitis viniferaGSVIVT01016148001
ORTHOMCL422(29 genes,8 taxa):Vitis viniferaGSVIVT01017935001
ORTHOMCL422(29 genes,8 taxa):Oryza sativaOs07t0206600-01
ORTHOMCL422(29 genes,8 taxa):Populus trichocarpaPOPTR_0001s25600.1
ORTHOMCL422(29 genes,8 taxa):Populus trichocarpaPOPTR_0008s15010.1
ORTHOMCL422(29 genes,8 taxa):Populus trichocarpaPOPTR_0008s15020.1
ORTHOMCL422(29 genes,8 taxa):Populus trichocarpaPOPTR_0009s04750.1
ORTHOMCL422(29 genes,8 taxa):Populus trichocarpaPOPTR_0010s10030.1
ORTHOMCL422(29 genes,8 taxa):Sorghum bicolorSb02g006150.1
ORTHOMCL422(29 genes,8 taxa):Carica papayaevm.TU.supercontig_112.55
ORTHOMCL422(29 genes,8 taxa):Carica papayaevm.TU.supercontig_508.3
ORTHOMCL422(29 genes,8 taxa):Carica papayaevm.TU.supercontig_508.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:270715..3365448 (+)A.thalianaChr1:400035..2965972 (+)419
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:906012..2655941 (+)B.rapaA10:15677577..17879701 (+)243
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0734022548222256850Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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