Basic Information
Gene Model:Bol041107
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:1616 bp
Transcript Length:615 bp
Protein Length:204 aa
Strand:-
Location:C05: 2474058 : 2475673
Gene CDSs(3): 1-345 | 657-914 | 1605-1616 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01032PP2C 6 14 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 1 198 2.6e-43IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 4 200 1.2e-48IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 91 193 9.3e-36IPR014045Protein phosphatase 2C, N-terminal
superfamilySSF81606Protein serine/threo 5 201 4.8e-50IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 6 202 7.8e-80IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 6 202 7.8e-80Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q8RX372e-94P2C02_ARATH Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1
TrEMBL
Best HitE_value Description
B1PBY33e-97B1PBY3_ARALP Putative uncharacterized protein OS=Arabidopsis lyrata subsp. petraea GN=AP3_H09.2 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384101e-59K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:270715..3365448 (+)A.thalianaChr1:400035..2965972 (+)419
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:906012..2655941 (+)B.rapaA10:15677577..17879701 (+)243
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0716021979082199748Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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