Basic Information
Gene Model:Bol041028
Gene Family:ARIADNE Gene Families
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:4219 bp
Transcript Length:1668 bp
Protein Length:555 aa
Strand:+
Location:C05: 2036592 : 2040810
Gene CDSs(15): 1-177 | 593-717 | 810-915 | 1005-1095 | 1309-1481 | 1743-1847 | 1929-2017 | 2157-2264 | 2432-2522 | 2630-2719 | 3160-3207 | 3382-3453 | 3537-3630 | 3724-3850 | 4048-4219 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11685ARIADNE RING ZINC FI 99 543 4.6e-304Not foundNot found
HMMPantherPTHR11685:SF10ARI-LIKE RING ZINC F 99 543 4.6e-304Not foundNot found
Segsegseg 14 30 NANot foundNot found
Segsegseg 394 405 NANot foundNot found
Segsegseg 526 550 NANot foundNot found
superfamilySSF57850RING/U-box 116 229 1.4e-12Not foundNot found
superfamilySSF57850RING/U-box 289 347 2.5e-16Not foundNot found
HMMPfamPF01485IBR 208 270 9.2e-26IPR002867Zinc finger, C6HC-type
Coilcoilcoiled-coil 356 377 NANot foundNot found
HMMSmartSM00647no description 274 344 0.084IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 208 270 2.1e-24IPR002867Zinc finger, C6HC-type
ProfileScanPS50089ZF_RING_2 139 185 9.760IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q84RR00.0ARI7_ARATH Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HYH60.0B9HYH6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_822354 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:1002734090.0K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT1G05890.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31510.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31760.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31770.1
ORTHOMCL241(38 genes,8 taxa):Arabidopsis thalianaAT2G31780.1
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004534
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol004656
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006452
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol006453
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol008223
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol009030
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol014128
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol023324
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol024724
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol041028
ORTHOMCL241(38 genes,8 taxa):Brassica oleraceaBol045042
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra005642
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra006112
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra015463
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021726
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra021742
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022479
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022845
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra022865
ORTHOMCL241(38 genes,8 taxa):Brassica rapaBra023338
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01003757001
ORTHOMCL241(38 genes,8 taxa):Vitis viniferaGSVIVT01010742001
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs04t0492100-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs08t0540300-01
ORTHOMCL241(38 genes,8 taxa):Oryza sativaOs09t0513800-01
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0007s02130.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0008s07680.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0010s18800.1
ORTHOMCL241(38 genes,8 taxa):Populus trichocarpaPOPTR_0017s06050.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb06g021080.1
ORTHOMCL241(38 genes,8 taxa):Sorghum bicolorSb07g025570.1
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_71.10
ORTHOMCL241(38 genes,8 taxa):Carica papayaevm.TU.supercontig_99.46
Tandem Duplication
ClusterGene Num.Gene List
Cluster_10802Bol041027 Bol041028 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1460669..2471323 (-)A.thalianaChr2:12936979..13856112 (+)53
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:906012..2655941 (+)B.rapaA10:15677577..17879701 (+)243
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0589017793571784529Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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