Basic Information
Gene Model:Bol041020
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:4229 bp
Transcript Length:1059 bp
Protein Length:352 aa
Strand:+
Location:C05: 1974466 : 1978694
Gene CDSs(5): 1-472 | 3086-3375 | 3621-3749 | 3957-4022 | 4128-4229 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 209 222 NANot foundNot found
Segsegseg 127 137 NANot foundNot found
Segsegseg 95 102 NANot foundNot found
Segsegseg 2 33 NANot foundNot found
superfamilySSF47459HLH, helix-loop-heli 283 351 2e-11IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 293 343 8.4e-12IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 290 338 4.5e-07IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 282 338 11.667IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q8H1021e-140BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9SN181e-67B9SN18_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_1518720 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1460669..2471323 (-)A.thalianaChr2:12936979..13856112 (+)53
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:906012..2655941 (+)B.rapaA10:15677577..17879701 (+)243
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0580517447731747693Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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