| Basic Information |
| Gene Model: | Bol041020 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | C05 |
| Scaffold: | Scaffold000012 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 4229 bp |
| Transcript Length: | 1059 bp |
| Protein Length: | 352 aa |
| Strand: | + |
| Location: | C05: 1974466 : 1978694 |
| Gene CDSs(5): | 1-472 | 3086-3375 | 3621-3749 | 3957-4022 | 4128-4229 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | Seg | seg | seg |
209 |
222 |
NA | Not found | Not found | | Seg | seg | seg |
127 |
137 |
NA | Not found | Not found | | Seg | seg | seg |
95 |
102 |
NA | Not found | Not found | | Seg | seg | seg |
2 |
33 |
NA | Not found | Not found | | superfamily | SSF47459 | HLH, helix-loop-heli |
283 |
351 |
2e-11 | IPR011598 | Helix-loop-helix DNA-binding | | HMMSmart | SM00353 | no description |
293 |
343 |
8.4e-12 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | HMMPfam | PF00010 | HLH |
290 |
338 |
4.5e-07 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | | ProfileScan | PS50888 | HLH |
282 |
338 |
11.667 | IPR001092 | Basic helix-loop-helix dimerisation region bHLH | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0005634 |
Cellular Component |
nucleus | | GO:0030528 |
Molecular Function |
transcription regulator activity | | GO:0045449 |
Biological Process |
regulation of transcription |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q8H102 | 1e-140 | BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | B9SN18 | 1e-67 | B9SN18_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_1518720 PE=4 SV=1 |
|
| KEGG |
| Best Hit | E_value | KO | EC or Symbol |
Description | Note: this gene was not detected its best hit in KEGG database. |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters. |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Compared to A.thaliana |
Compared to B.rapa |
| Synteny Regions |
|
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | | A | AT1G05805 | 1744773 | 1747693 | Chr1 | Subgenome_III(LF) | 492 | |
|
