Basic Information
Gene Model:Bol041015
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:787 bp
Transcript Length:447 bp
Protein Length:148 aa
Strand:+
Location:C05: 1943005 : 1943791
Gene CDSs(5): 1-108 | 197-262 | 338-403 | 486-530 | 626-787 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 22 96 8.1e-09IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 27 76 8.547IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LT679e-24BH113_ARATH Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q7XJU27e-66Q7XJU2_ARATH BHLH transcription factor OS=Arabidopsis thaliana GN=bHLH-alpha PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27356(2 genes,2 taxa):Brassica oleraceaBol041015
ORTHOMCL27356(2 genes,2 taxa):Brassica rapaBra015450
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1460669..2471323 (-)A.thalianaChr2:12936979..13856112 (+)53
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:906012..2655941 (+)B.rapaA10:15677577..17879701 (+)243
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0571017160221717275Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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