Basic Information
Gene Model:Bol040922
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:1276 bp
Transcript Length:663 bp
Protein Length:220 aa
Strand:-
Location:C05: 1320641 : 1321916
Gene CDSs(5): 1-144 | 255-317 | 477-597 | 680-821 | 1084-1276 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50892V_SNARE 131 191 19.234IPR001388Synaptobrevin
ProfileScanPS50859LONGIN 11 115 28.416IPR010908Longin
Segsegseg 194 212 NANot foundNot found
PatternScanPS00417SYNAPTOBREVIN 149 168 NAIPR001388Synaptobrevin
HMMPfamPF00957Synaptobrevin 128 216 6.1e-41IPR001388Synaptobrevin
HMMPantherPTHR21136SNARE PROTEINS 11 220 4.3e-133Not foundNot found
HMMPantherPTHR21136:SF8VAMP-7 11 220 4.3e-133Not foundNot found
superfamilySSF64356SNARE-like 6 123 7.1e-32IPR011012Longin-like
Gene3DG3DSA:1.20.5.110no description 116 195 2.1e-25Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9ZTW31e-126VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q681L91e-125Q681L9_ARATH Putative vesicle-associated membrane protein, synaptobrevin 7B OS=Arabidopsis thaliana GN=At1g04740 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G047601e-109K08511ATVAMP72vesicle-associated membrane protein 72
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15192(4 genes,3 taxa):Arabidopsis thalianaAT1G04750.1
ORTHOMCL15192(4 genes,3 taxa):Brassica oleraceaBol011567
ORTHOMCL15192(4 genes,3 taxa):Brassica oleraceaBol040922
ORTHOMCL15192(4 genes,3 taxa):Brassica rapaBra015345
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1203990..1429359 (-)A.thalianaChr2:13962318..14162527 (+)13
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:906012..2655941 (+)B.rapaA10:15677577..17879701 (+)243
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0475013314661333534Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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