Basic Information
Gene Model:Bol040832
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:1623 bp
Transcript Length:1143 bp
Protein Length:380 aa
Strand:-
Location:C05: 866770 : 868392
Gene CDSs(5): 1-249 | 506-729 | 810-927 | 990-1307 | 1390-1623 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00332no description 46 340 6.1e-50IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 87 298 5.7e-33IPR014045Protein phosphatase 2C, N-terminal
Gene3DG3DSA:3.60.40.10no description 54 299 1.1e-44IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 32 299 5.5e-107IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 32 299 5.5e-107Not foundNot found
Coilcoilcoiled-coil 117 145 NANot foundNot found
Segsegseg 113 147 NANot foundNot found
superfamilySSF81606Protein serine/threo 36 299 3.6e-46IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LR651e-147P2C01_ARATH Probable protein phosphatase 2C 1 OS=Arabidopsis thaliana GN=PPC6-6 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RW411e-138B9RW41_RICCO Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_1175970 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434303e-26K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:508114..932756 (+)A.thalianaChr4:844409..1527133 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1002..932756 (+)B.rapaA10:12878723..13865706 (+)139
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G03590894254896440Chr1Subgenome_III(LF)492
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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