Basic Information
Gene Model:Bol040721
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:2327 bp
Transcript Length:1035 bp
Protein Length:344 aa
Strand:+
Location:C05: 325407 : 327733
Gene CDSs(6): 1-146 | 280-342 | 522-638 | 1182-1587 | 1928-2079 | 2177-2327 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 327 339 NANot foundNot found
superfamilySSF103481Multidrug resistance 31 147 2.9e-08Not foundNot found
superfamilySSF103481Multidrug resistance 207 318 8.7e-10Not foundNot found
HMMPfamPF00892DUF6 202 311 8.4e-08IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 6 140 3.6e-12IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1638e-455NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q5XEZ01e-169Q5XEZ0_ARATH At1g01070 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13696(5 genes,3 taxa):Arabidopsis thalianaAT1G01070.1
ORTHOMCL13696(5 genes,3 taxa):Brassica oleraceaBol018443
ORTHOMCL13696(5 genes,3 taxa):Brassica oleraceaBol040721
ORTHOMCL13696(5 genes,3 taxa):Brassica rapaBra032617
ORTHOMCL13696(5 genes,3 taxa):Brassica rapaBra033290
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1002..364693 (-)A.thalianaChr1:3631..291094 (+)56
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1002..932756 (+)B.rapaA10:12878723..13865706 (+)139
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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