Basic Information
Gene Model:Bol040675
Gene Family:U-box Gene Family
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
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Gene Structure
Nucleotide Length:2418 bp
Transcript Length:1308 bp
Protein Length:435 aa
Strand:+
Location:C05: 43012 : 45429
Gene CDSs(7): 1-163 | 447-550 | 669-799 | 924-1028 | 1121-1277 | 1581-2024 | 2215-2418 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF04564U-box 357 431 1.4e-22IPR003613U box domain
Coilcoilcoiled-coil 313 334 NANot foundNot found
Coilcoilcoiled-coil 270 305 NANot foundNot found
Coilcoilcoiled-coil 231 262 NANot foundNot found
superfamilySSF57850RING/U-box 354 431 3.7e-16Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 341 431 9.3e-24Not foundNot found
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 341 431 9.3e-24Not foundNot found
Gene3DG3DSA:3.30.40.10no description 354 431 1.4e-21Not foundNot found
Segsegseg 230 246 NANot foundNot found
Segsegseg 272 282 NANot foundNot found
Segsegseg 341 355 NANot foundNot found
Segsegseg 174 195 NANot foundNot found
HMMSmartSM00504no description 361 424 6.1e-21IPR003613U box domain
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8GXQ71e-136PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GQA02e-35B9GQA0_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_816599 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_178792e-09K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17254(3 genes,3 taxa):Arabidopsis thalianaAT1G01670.1
ORTHOMCL17254(3 genes,3 taxa):Brassica oleraceaBol040675
ORTHOMCL17254(3 genes,3 taxa):Brassica rapaBra033243
Tandem Duplication
ClusterGene Num.Gene List
Cluster_3113Bol040674 Bol040675 Bol040676 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:20386..302913 (-)A.thalianaChr4:345952..659178 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1002..932756 (+)B.rapaA10:12878723..13865706 (+)139
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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