Basic Information
Gene Model:Bol040674
Gene Family:U-box Gene Family
Chromosome:C05
Scaffold:Scaffold000012
Sequence:
 | 
Gene Structure
Nucleotide Length:2194 bp
Transcript Length:921 bp
Protein Length:306 aa
Strand:+
Location:C05: 39733 : 41926
Gene CDSs(7): 1-154 | 674-777 | 1012-1142 | 1255-1356 | 1449-1575 | 1765-1869 | 1997-2194 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF04564U-box 232 304 1.3e-20IPR003613U box domain
superfamilySSF57850RING/U-box 227 304 1.1e-16Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 224 297 3.1e-20Not foundNot found
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 224 297 3.1e-20Not foundNot found
Gene3DG3DSA:3.30.40.10no description 227 304 1.5e-22Not foundNot found
Segsegseg 21 32 NANot foundNot found
HMMSmartSM00504no description 234 297 3.7e-24IPR003613U box domain
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9LQ921e-106PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GQA01e-34B9GQA0_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_816599 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_178792e-07K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15181(4 genes,3 taxa):Arabidopsis thalianaAT1G01680.1
ORTHOMCL15181(4 genes,3 taxa):Brassica oleraceaBol040674
ORTHOMCL15181(4 genes,3 taxa):Brassica rapaBra000412
ORTHOMCL15181(4 genes,3 taxa):Brassica rapaBra033242
Tandem Duplication
ClusterGene Num.Gene List
Cluster_3113Bol040674 Bol040675 Bol040676 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:20386..302913 (-)A.thalianaChr4:345952..659178 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:1002..932756 (+)B.rapaA10:12878723..13865706 (+)139
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo