Basic Information
Gene Model:Bol040662
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000013_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1385 bp
Transcript Length:909 bp
Protein Length:302 aa
Strand:+
Location:Scaffold000013_P2: 2343254 : 2344638
Gene CDSs(5): 1-185 | 381-443 | 552-668 | 758-1145 | 1230-1385 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 44 147 1.9e-08Not foundNot found
HMMPfamPF00892DUF6 19 146 9.8e-11IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1635e-335NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8GYT01e-136Q8GYT0_ARATH Putative uncharacterized protein At4g01450/F11O4_14 OS=Arabidopsis thaliana GN=At4g01450/F11O4_14 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14201(5 genes,3 taxa):Arabidopsis thalianaAT4G01450.2
ORTHOMCL14201(5 genes,3 taxa):Brassica oleraceaBol030717
ORTHOMCL14201(5 genes,3 taxa):Brassica oleraceaBol040662
ORTHOMCL14201(5 genes,3 taxa):Brassica rapaBra000923
ORTHOMCL14201(5 genes,3 taxa):Brassica rapaBra008548
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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