Basic Information
Gene Model:Bol040659
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000013_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:9447 bp
Transcript Length:1014 bp
Protein Length:337 aa
Strand:+
Location:Scaffold000013_P2: 2269129 : 2278575
Gene CDSs(5): 1-125 | 987-1049 | 1309-1425 | 1508-1922 | 9154-9447 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00061ADH_SHORT 180 208 NAIPR002198Short-chain dehydrogenase/reductase SDR
superfamilySSF103481Multidrug resistance 24 140 1.2e-07Not foundNot found
superfamilySSF56672DNA/RNA polymerases 241 334 2e-19Not foundNot found
HMMPfamPF00892DUF6 1 133 1.7e-08IPR000620Protein of unknown function DUF6, transmembrane
HMMPantherPTHR10178GAG/POL/ENV POLYPROT 241 334 3.3e-28Not foundNot found
HMMPantherPTHR10178:SF14RETROVIRUS POLYPROTE 241 334 3.3e-28Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0008152 Biological Process metabolic process
GO:0016020 Cellular Component membrane
GO:0016491 Molecular Function oxidoreductase activity
Swiss-Prot
Best HitE_value Description
Q6J1638e-265NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9M1311e-111Q9M131_ARATH Putative uncharacterized protein AT4g01430 OS=Arabidopsis thaliana GN=AT4g01430 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
mgr:MGG_138372e-08K07497K07497putative transposase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27331(2 genes,2 taxa):Brassica oleraceaBol040659
ORTHOMCL27331(2 genes,2 taxa):Brassica rapaBra008545
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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