Basic Information
Gene Model:Bol040525
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000013_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2438 bp
Transcript Length:2235 bp
Protein Length:744 aa
Strand:-
Location:Scaffold000013_P2: 759158 : 761595
Gene CDSs(3): 1-1214 | 1323-1445 | 1541-2438 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 413 690 39.934IPR000719Protein kinase, catalytic domain
HMMSmartSM00219no description 413 683 7.3e-34IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 413 690 3e-40IPR002290Serine/threonine-protein kinase domain
Gene3DG3DSA:1.10.510.10no description 491 694 2.5e-50Not foundNot found
Gene3DG3DSA:3.30.200.20no description 394 488 2.6e-24Not foundNot found
HMMPfamPF08488WAK 168 271 1.6e-42IPR013695Wall-associated kinase
HMMPfamPF00069Pkinase 413 683 2.8e-48IPR017442Serine/threonine-protein kinase-like domain
HMMPantherPTHR23258SERINE-THREONINE PRO 282 719 7.9e-213Not foundNot found
HMMPantherPTHR23258:SF444WALL-ASSOCIATED PROT 282 719 7.9e-213Not foundNot found
superfamilySSF56112Protein kinase-like 398 703 1.1e-82IPR011009Protein kinase-like domain
Segsegseg 698 704 NANot foundNot found
Segsegseg 341 359 NANot foundNot found
Segsegseg 363 377 NANot foundNot found
Segsegseg 6 18 NANot foundNot found
Segsegseg 34 48 NANot foundNot found
Coilcoilcoiled-coil 676 704 NANot foundNot found
PatternScanPS01187EGF_CA 300 327 NAIPR018097EGF-like calcium-binding, conserved site
PatternScanPS00108PROTEIN_KINASE_ST 534 546 NAIPR008271Serine/threonine-protein kinase, active site
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005509 Molecular Function calcium ion binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q8RY170.0WAKLI_ARATH Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q3ECA40.0Q3ECA4_ARATH Putative uncharacterized protein At1g79670.2 OS=Arabidopsis thaliana GN=At1g79670 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G594201e-52K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16110.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16120.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16130.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16150.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16160.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16260.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G17910.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G19390.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G69730.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G79670.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G79680.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT4G31100.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT4G31110.1
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009838
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009839
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009840
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol010697
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol011559
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018028
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018030
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018031
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol021492
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol021493
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol026855
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol029330
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol033707
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol038554
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol038555
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol040524
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol040525
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol045915
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra003598
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra011245
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra011247
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra015361
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra016370
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra024026
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra025736
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra026731
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra026732
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra030595
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra030596
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra031078
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra031079
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra035134
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra035135
ORTHOMCL72(75 genes,6 taxa):Vitis viniferaGSVIVT01008212001
ORTHOMCL72(75 genes,6 taxa):Vitis viniferaGSVIVT01008432001
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03190.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03210.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03240.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07540.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07550.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07620.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07630.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07650.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18410.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18440.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18470.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18480.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18490.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18500.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0004s20370.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0018s14500.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0018s14510.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0075s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0075s00210.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00220.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00230.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0126s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0126s00240.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0316s00220.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_1809s00200.1
ORTHOMCL72(75 genes,6 taxa):Carica papayaevm.TU.supercontig_106.105
Tandem Duplication
ClusterGene Num.Gene List
Cluster_8472Bol040524 Bol040525 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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