Basic Information
Gene Model:Bol040520
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000013_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2159 bp
Transcript Length:606 bp
Protein Length:201 aa
Strand:+
Location:Scaffold000013_P2: 729039 : 731197
Gene CDSs(4): 1-224 | 293-507 | 764-798 | 2028-2159 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR12380:SF7SYNTAXIN 51 6 196 7.5e-134Not foundNot found
HMMPantherPTHR12380SYNTAXIN 6 196 7.5e-134Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q94KK72e-95SYP52_ARATH Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9DHH71e-85B9DHH7_ARATH AT1G16240 protein OS=Arabidopsis thaliana GN=AT1G16240 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G795902e-95K08503SYP5syntaxin of plants SYP5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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