Basic Information
Gene Model:Bol040464
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000013_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2698 bp
Transcript Length:612 bp
Protein Length:203 aa
Strand:+
Location:Scaffold000013_P2: 72935 : 75632
Gene CDSs(3): 1-216 | 1169-1390 | 2525-2698 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 119 130 NANot foundNot found
Segsegseg 11 30 NANot foundNot found
Segsegseg 86 101 NANot foundNot found
HMMPfamPF05687DUF822 2 126 1.7e-72IPR008540BZR1, transcriptional repressor
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9ZV883e-55BEH4_ARATH BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9I1R52e-33B9I1R5_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_805972 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G193501e-22K14503BZR1_2brassinosteroid resistant 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3662(12 genes,8 taxa):Arabidopsis thalianaAT1G78700.1
ORTHOMCL3662(12 genes,8 taxa):Brassica oleraceaBol040464
ORTHOMCL3662(12 genes,8 taxa):Brassica rapaBra008378
ORTHOMCL3662(12 genes,8 taxa):Brassica rapaBra035060
ORTHOMCL3662(12 genes,8 taxa):Vitis viniferaGSVIVT01014154001
ORTHOMCL3662(12 genes,8 taxa):Oryza sativaOs06t0552300-01
ORTHOMCL3662(12 genes,8 taxa):Populus trichocarpaPOPTR_0001s39520.1
ORTHOMCL3662(12 genes,8 taxa):Populus trichocarpaPOPTR_0001s39520.2
ORTHOMCL3662(12 genes,8 taxa):Populus trichocarpaPOPTR_0011s10810.1
ORTHOMCL3662(12 genes,8 taxa):Populus trichocarpaPOPTR_0439s00200.1
ORTHOMCL3662(12 genes,8 taxa):Sorghum bicolorSb10g021750.1
ORTHOMCL3662(12 genes,8 taxa):Carica papayaevm.TU.supercontig_77.48
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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