Basic Information
Gene Model:Bol040377
Gene Family:Protein Kinase Gene Families
Chromosome:C05
Scaffold:Scaffold000013_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2160 bp
Transcript Length:2160 bp
Protein Length:719 aa
Strand:-
Location:C05: 29603747 : 29605906
Gene CDSs(1): 1-2160 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF56112Protein kinase-like 382 686 2.2e-76IPR011009Protein kinase-like domain
superfamilySSF52058L domain-like 1 308 1e-57Not foundNot found
HMMSmartSM00219no description 412 686 2.9e-32IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 412 690 3.9e-37IPR002290Serine/threonine-protein kinase domain
Gene3DG3DSA:1.10.510.10no description 490 697 4.1e-48Not foundNot found
Gene3DG3DSA:3.30.200.20no description 393 487 1.7e-20Not foundNot found
Gene3DG3DSA:3.80.10.10no description 1 308 1.3e-62Not foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 535 547 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 418 441 NAIPR017441Protein kinase, ATP binding site
HMMPfamPF00069Pkinase 412 686 9.1e-45IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 240 262 1.7IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 192 214 1.1IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 216 238 0.95IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 76 98 0.031IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 100 122 1.1IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 28 50 0.0022IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 52 74 0.89IPR001611Leucine-rich repeat
Segsegseg 28 40 NANot foundNot found
Segsegseg 251 271 NANot foundNot found
Segsegseg 351 364 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 412 690 39.297IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 12 593 0Not foundNot found
HMMPantherPTHR23258:SF122SERINE/THREONINE-PRO 12 593 0Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9LJF30.0BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0LGH10.0C0LGH1_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002526470.0K13415BRI1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL267(36 genes,8 taxa):Arabidopsis thalianaAT1G55610.1
ORTHOMCL267(36 genes,8 taxa):Arabidopsis thalianaAT2G01950.1
ORTHOMCL267(36 genes,8 taxa):Arabidopsis thalianaAT4G39400.1
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol001136
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol016018
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol018550
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol028816
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol035223
ORTHOMCL267(36 genes,8 taxa):Brassica oleraceaBol040377
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra010684
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra011862
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra024839
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra024840
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra030846
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra033615
ORTHOMCL267(36 genes,8 taxa):Brassica rapaBra034681
ORTHOMCL267(36 genes,8 taxa):Vitis viniferaGSVIVT01011586001
ORTHOMCL267(36 genes,8 taxa):Vitis viniferaGSVIVT01014856001
ORTHOMCL267(36 genes,8 taxa):Vitis viniferaGSVIVT01022261001
ORTHOMCL267(36 genes,8 taxa):Oryza sativaOs01t0718300-01
ORTHOMCL267(36 genes,8 taxa):Oryza sativaOs01t0718300-02
ORTHOMCL267(36 genes,8 taxa):Oryza sativaOs09t0293500-01
ORTHOMCL267(36 genes,8 taxa):Oryza sativaOs10t0114400-01
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0001s47680.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0005s08880.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0007s06940.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0008s13990.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0010s11150.1
ORTHOMCL267(36 genes,8 taxa):Populus trichocarpaPOPTR_0011s17240.1
ORTHOMCL267(36 genes,8 taxa):Sorghum bicolorSb01g026940.1
ORTHOMCL267(36 genes,8 taxa):Sorghum bicolorSb02g019470.1
ORTHOMCL267(36 genes,8 taxa):Sorghum bicolorSb03g012040.1
ORTHOMCL267(36 genes,8 taxa):Sorghum bicolorSb03g032990.1
ORTHOMCL267(36 genes,8 taxa):Carica papayaevm.TU.supercontig_12.59
ORTHOMCL267(36 genes,8 taxa):Carica papayaevm.TU.supercontig_2.108
ORTHOMCL267(36 genes,8 taxa):Carica papayaevm.TU.supercontig_72.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:28425446..30798882 (-)A.thalianaChr3:3617523..4902628 (+)200
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:28778329..30025537 (+)B.rapaA08:18163486..18963138 (-)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1338043465574350923Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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