Basic Information
Gene Model:Bol040266
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000014
Sequence:
 | 
Gene Structure
Nucleotide Length:2026 bp
Transcript Length:1326 bp
Protein Length:441 aa
Strand:-
Location:C04: 26656760 : 26658785
Gene CDSs(5): 1-351 | 473-696 | 881-998 | 1103-1477 | 1769-2026 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 62 383 1.8e-58IPR001932Protein phosphatase 2C-related
Segsegseg 6 39 NANot foundNot found
Segsegseg 406 420 NANot foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 42 399 1.8e-145IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 42 399 1.8e-145Not foundNot found
HMMSmartSM00332no description 54 377 4.2e-62IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 44 384 3.8e-59IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 201 339 9e-37IPR014045Protein phosphatase 2C, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9FG610.0P2C74_ARATH Probable protein phosphatase 2C 74 OS=Arabidopsis thaliana GN=At5g36250 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RM681e-149B9RM68_RICCO Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_1077980 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434309e-32K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19346(3 genes,3 taxa):Arabidopsis thalianaAT5G36250.1
ORTHOMCL19346(3 genes,3 taxa):Brassica oleraceaBol040266
ORTHOMCL19346(3 genes,3 taxa):Brassica rapaBra035360
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:26543430..27069976 (+)B.rapaA02:23330024..23949085 (+)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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