Basic Information
Gene Model:Bol040258
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000014
Sequence:
 | 
Gene Structure
Nucleotide Length:4625 bp
Transcript Length:3255 bp
Protein Length:1084 aa
Strand:-
Location:C04: 26574636 : 26579260
Gene CDSs(8): 1-617 | 697-880 | 1123-1222 | 1506-1592 | 1726-1964 | 2389-2471 | 2596-2722 | 2808-4625 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.40.10no description 568 637 9.1e-13Not foundNot found
ProfileScanPS51186GNAT 712 878 10.528IPR000182GCN5-related N-acetyltransferase
ProfileScanPS50016ZF_PHD_2 576 621 9.668IPR019787Zinc finger, PHD-finger
HMMPfamPF00628PHD 578 621 1.1e-13IPR019787Zinc finger, PHD-finger
HMMPfamPF02178AT_hook 206 218 0.16IPR017956AT hook, DNA-binding motif
HMMPfamPF02178AT_hook 156 168 0.14IPR017956AT hook, DNA-binding motif
HMMSmartSM00249no description 620 675 1.8IPR001965Zinc finger, PHD-type
HMMSmartSM00249no description 578 619 4e-08IPR001965Zinc finger, PHD-type
HMMPantherPTHR13712RING FINGER-CONTAINI 573 618 8.9e-07Not foundNot found
HMMPantherPTHR13712:SF18TRANSCRIPTION INTERM 573 618 8.9e-07Not foundNot found
Segsegseg 582 594 NANot foundNot found
Segsegseg 940 968 NANot foundNot found
Segsegseg 31 44 NANot foundNot found
Segsegseg 240 257 NANot foundNot found
Segsegseg 371 383 NANot foundNot found
superfamilySSF55729Acyl-CoA N-acyltrans 762 859 4.9e-08IPR016181Acyl-CoA N-acyltransferase
superfamilySSF57903FYVE/PHD zinc finger 570 637 1.4e-13IPR011011Zinc finger, FYVE/PHD-type
PatternScanPS01359ZF_PHD_1 579 645 NAIPR019786Zinc finger, PHD-type, conserved site
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005515 Molecular Function protein binding
GO:0008080 Molecular Function N-acetyltransferase activity
GO:0008152 Biological Process metabolic process
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q6PDQ21e-09CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FG530.0Q9FG53_ARATH Gb|AAC80581.1 OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_009822e-11K11655BAZ1A, ACF1bromodomain adjacent to zinc finger domain protein 1A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1230(18 genes,8 taxa):Arabidopsis thalianaAT1G05380.1
ORTHOMCL1230(18 genes,8 taxa):Arabidopsis thalianaAT4G14920.1
ORTHOMCL1230(18 genes,8 taxa):Arabidopsis thalianaAT5G36670.1
ORTHOMCL1230(18 genes,8 taxa):Arabidopsis thalianaAT5G36740.1
ORTHOMCL1230(18 genes,8 taxa):Brassica oleraceaBol040258
ORTHOMCL1230(18 genes,8 taxa):Brassica oleraceaBol040983
ORTHOMCL1230(18 genes,8 taxa):Brassica rapaBra020653
ORTHOMCL1230(18 genes,8 taxa):Brassica rapaBra035350
ORTHOMCL1230(18 genes,8 taxa):Vitis viniferaGSVIVT01001168001
ORTHOMCL1230(18 genes,8 taxa):Vitis viniferaGSVIVT01017972001
ORTHOMCL1230(18 genes,8 taxa):Oryza sativaOs03t0747600-02
ORTHOMCL1230(18 genes,8 taxa):Populus trichocarpaPOPTR_0002s05230.1
ORTHOMCL1230(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s23270.1
ORTHOMCL1230(18 genes,8 taxa):Populus trichocarpaPOPTR_0008s15200.1
ORTHOMCL1230(18 genes,8 taxa):Populus trichocarpaPOPTR_0010s09810.1
ORTHOMCL1230(18 genes,8 taxa):Sorghum bicolorSb01g008195.1
ORTHOMCL1230(18 genes,8 taxa):Sorghum bicolorSb02g004100.1
ORTHOMCL1230(18 genes,8 taxa):Carica papayaevm.TU.supercontig_58.105
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:24671506..26617119 (+)B.rapaA04:19268008..20719656 (-)92
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
SAT5G367401446079014465727Chr5Subgenome_III(LF)137
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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