Basic Information
Gene Model:Bol040131
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000014
Sequence:
 | 
Gene Structure
Nucleotide Length:2652 bp
Transcript Length:2652 bp
Protein Length:883 aa
Strand:-
Location:C04: 25028402 : 25031053
Gene CDSs(1): 1-2652 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00559MOLYBDOPTERIN_EUK 756 792 NAIPR000572Oxidoreductase, molybdopterin binding
PatternScanPS00108PROTEIN_KINASE_ST 652 664 NAIPR008271Serine/threonine-protein kinase, active site
HMMSmartSM00219no description 528 803 1.9e-33IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 528 806 1.9e-26IPR002290Serine/threonine-protein kinase domain
ProfileScanPS50011PROTEIN_KINASE_DOM 528 813 36.570IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 39 876 3.9e-218Not foundNot found
HMMPantherPTHR23258:SF418PTO-LIKE KINASE 39 876 3.9e-218Not foundNot found
Segsegseg 683 694 NANot foundNot found
Segsegseg 464 485 NANot foundNot found
Gene3DG3DSA:1.10.510.10no description 607 814 2.3e-47Not foundNot found
Gene3DG3DSA:3.30.200.20no description 509 604 5.2e-21Not foundNot found
superfamilySSF56112Protein kinase-like 498 811 1.1e-78IPR011009Protein kinase-like domain
HMMPfamPF00069Pkinase 528 729 3.7e-39IPR017442Serine/threonine-protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0009055 Molecular Function electron carrier activity
Swiss-Prot
Best HitE_value Description
Q9FID90.0Y5389_ARATH Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FID80.0Q9FID8_ARATH Receptor-like protein kinase OS=Arabidopsis thaliana GN=At5g39000 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G389900.0K04733IRAK4interleukin-1 receptor-associated kinase 4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT1G30570.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT2G21480.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT2G23200.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT2G39360.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT3G04690.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT3G46290.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT3G51550.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT4G39110.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G24010.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G28680.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G38990.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G39000.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G39020.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G39030.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G54380.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G59700.1
ORTHOMCL15(156 genes,8 taxa):Arabidopsis thalianaAT5G61350.1
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol001386
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol003351
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol004978
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol006717
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol010609
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol014574
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol014601
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol014758
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol015031
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol016035
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol016633
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol017280
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol018534
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol020421
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol022464
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol027956
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol036282
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol036480
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol038854
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol040130
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol040131
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol041389
ORTHOMCL15(156 genes,8 taxa):Brassica oleraceaBol044718
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra000130
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra002541
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra002993
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra006873
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra009722
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra009888
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra010006
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra010704
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra011875
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra012850
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra018214
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra020618
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra025488
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra028219
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra028220
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra028425
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra029027
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra030296
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra032171
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra032404
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra033598
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra033826
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra035934
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra036791
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra038906
ORTHOMCL15(156 genes,8 taxa):Brassica rapaBra039190
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01000200001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01000210001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01000211001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01000212001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01021662001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01025061001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01028870001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01032879001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01032883001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01032888001
ORTHOMCL15(156 genes,8 taxa):Vitis viniferaGSVIVT01034992001
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs01t0155500-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs01t0253000-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs01t0769700-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs01t0769700-02
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs03t0281500-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs03t0333200-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs04t0619600-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs04t0619600-02
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs04t0619600-03
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0280700-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0280700-02
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0317700-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0317900-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0318700-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs05t0318700-02
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs06t0126250-00
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs06t0334300-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs07t0147600-01
ORTHOMCL15(156 genes,8 taxa):Oryza sativaOs07t0147600-02
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0001s24080.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0001s41620.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0001s47120.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0004s07780.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0004s16610.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s05690.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s13320.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s13330.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s13340.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18380.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18690.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18710.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18750.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0005s18760.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0006s11050.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0008s10500.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0009s03170.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0009s12320.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0010s14990.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0010s15570.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0010s22010.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0011s12550.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0011s16860.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0013s03980.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0015s07280.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0016s14560.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s01660.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13130.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13150.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13170.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13190.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13240.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0017s13270.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0096s00220.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0125s00210.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0221s00210.1
ORTHOMCL15(156 genes,8 taxa):Populus trichocarpaPOPTR_0554s00200.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb01g007450.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb01g036260.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb01g039000.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb02g002840.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb03g005510.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb03g009660.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb06g028840.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb06g029710.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb09g001733.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb09g004680.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb09g009320.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb10g001580.1
ORTHOMCL15(156 genes,8 taxa):Sorghum bicolorSb10g025840.1
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.contig_32448.1
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.contig_36792.1
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_1.336
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_107.101
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_13.288
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_14.203
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_252.1
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_617.4
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_86.73
ORTHOMCL15(156 genes,8 taxa):Carica papayaevm.TU.supercontig_9.55
Tandem Duplication
ClusterGene Num.Gene List
Cluster_11632Bol040130 Bol040131 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:24020183..25641687 (-)A.thalianaChr5:15217910..16058999 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:24497050..25809518 (+)B.rapaA07:10184605..10503937 (-)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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