Basic Information
Gene Model:Bol040114
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C04
Scaffold:Scaffold000014
Sequence:
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Gene Structure
Nucleotide Length:2104 bp
Transcript Length:1242 bp
Protein Length:413 aa
Strand:-
Location:C04: 24830044 : 24832147
Gene CDSs(7): 1-141 | 223-324 | 401-643 | 1134-1316 | 1389-1502 | 1572-1748 | 1823-2104 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51182C2_TENSIN 240 397 18.144IPR014020Tensin phosphatase, C2 domain
ProfileScanPS51181PPASE_TENSIN 42 211 28.028IPR014019Phosphatase tensin type
Gene3DG3DSA:3.90.190.10no description 35 213 7.8e-64Not foundNot found
HMMPfamPF10409PTEN_C2 328 396 5.1e-13IPR014020Tensin phosphatase, C2 domain
HMMPfamPF00782DSPc 150 180 0.00014IPR000340Dual specificity phosphatase, catalytic domain
PatternScanPS00383TYR_PHOSPHATASE_1 150 160 NAIPR016130Protein-tyrosine phosphatase, active site
HMMPantherPTHR12305PHOSPHATASE WITH HOM 48 400 2.3e-301Not foundNot found
HMMPantherPTHR12305:SF10PTEN, ARATH 48 400 2.3e-301Not foundNot found
superfamilySSF49562C2 domain (Calcium/l 279 398 1.3e-23IPR008973C2 calcium/lipid-binding region, CaLB
superfamilySSF52799(Phosphotyrosine pro 50 213 2.9e-40Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q8T9S73e-51PTEN_DICDI Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FLZ50.0Q9FLZ5_ARATH Similarity to protein-tyrosine phosphatase OS=Arabidopsis thaliana GN=At5g39400/MUL8_80 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G394000.0K01110E3.1.3.67, PTENphosphatidylinositol-3,4,5-trisphosphate 3-phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10614(8 genes,6 taxa):Arabidopsis thalianaAT5G39400.1
ORTHOMCL10614(8 genes,6 taxa):Brassica oleraceaBol036475
ORTHOMCL10614(8 genes,6 taxa):Brassica oleraceaBol040114
ORTHOMCL10614(8 genes,6 taxa):Brassica rapaBra028240
ORTHOMCL10614(8 genes,6 taxa):Brassica rapaBra028431
ORTHOMCL10614(8 genes,6 taxa):Vitis viniferaGSVIVT01011486001
ORTHOMCL10614(8 genes,6 taxa):Populus trichocarpaPOPTR_0017s12540.1
ORTHOMCL10614(8 genes,6 taxa):Carica papayaevm.TU.supercontig_14.140
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:24020183..25641687 (-)A.thalianaChr5:15217910..16058999 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:24497050..25809518 (+)B.rapaA07:10184605..10503937 (-)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
SAT5G394001576603715768244Chr5Subgenome_III(LF)137
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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