Basic Information
Gene Model:Bol039928
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000015
Sequence:
 | 
Gene Structure
Nucleotide Length:1070 bp
Transcript Length:579 bp
Protein Length:192 aa
Strand:+
Location:C06: 32571676 : 32572745
Gene CDSs(5): 1-130 | 226-302 | 501-578 | 690-760 | 848-1070 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00072Response_reg 20 143 7.9e-24IPR001789Signal transduction response regulator, receiver region
HMMSmartSM00448no description 18 145 7.3e-22IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 7 150 6.7e-19Not foundNot found
HMMPantherPTHR23283:SF49TWO-COMPONENT SENSOR 7 150 6.7e-19Not foundNot found
Gene3DG3DSA:3.40.50.2300no description 12 146 2.6e-23Not foundNot found
superfamilySSF52172CheY-like 15 154 3.7e-27IPR011006CheY-like
Segsegseg 171 183 NANot foundNot found
Segsegseg 7 15 NANot foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 19 146 27.053IPR001789Signal transduction response regulator, receiver region
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q7G8V21e-73ARR15_ARATH Two-component response regulator ARR15 OS=Arabidopsis thaliana GN=ARR15 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2HIJ63e-61Q2HIJ6_ARATH At1g19050 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G748902e-73K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL27265(2 genes,2 taxa):Brassica oleraceaBol039928
ORTHOMCL27265(2 genes,2 taxa):Brassica rapaBra003782
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31966095..34193489 (-)A.thalianaChr1:5891324..7007651 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:32363735..34243213 (+)B.rapaA09:3929405..4572882 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G748902813159028132710Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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