Basic Information
Gene Model:Bol039925
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000015
Sequence:
 | 
Gene Structure
Nucleotide Length:3208 bp
Transcript Length:1509 bp
Protein Length:502 aa
Strand:+
Location:C06: 32557175 : 32560382
Gene CDSs(15): 1-112 | 194-336 | 412-492 | 579-727 | 810-902 | 1001-1124 | 1256-1321 | 1403-1469 | 1606-1682 | 1941-2054 | 2363-2440 | 2533-2684 | 2761-2821 | 2910-3016 | 3124-3208 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.605.10no description 10 303 1.8e-96IPR016162Aldehyde dehydrogenase, N-terminal
HMMPantherPTHR11699ALDEHYDE DEHYDROGENA 53 498 0IPR015590Aldehyde dehydrogenase
HMMPantherPTHR11699:SF45BETAINE-ALDEHYDE DEH 53 498 0Not foundNot found
HMMPfamPF00171Aldedh 17 486 1.6e-255IPR015590Aldehyde dehydrogenase
PatternScanPS00687ALDEHYDE_DEHYDR_GLU 260 267 NAIPR016160Aldehyde dehydrogenase, conserved site
PatternScanPS00070ALDEHYDE_DEHYDR_CYS 288 299 NAIPR016160Aldehyde dehydrogenase, conserved site
superfamilySSF53720ALDH-like 6 489 1.6e-177IPR016161Aldehyde/histidinol dehydrogenase
Gene Ontology
GO TermGO TypeDescription
GO:0008152 Biological Process metabolic process
GO:0016491 Molecular Function oxidoreductase activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
Q9S7950.0BADH1_ARATH Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q5Q0330.0Q5Q033_CHOBU Betaine-aldehyde dehydrogenase OS=Chorispora bungeana PE=2 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G749200.0K00130betB, gbsAbetaine-aldehyde dehydrogenase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2012(15 genes,8 taxa):Arabidopsis thalianaAT1G74920.1
ORTHOMCL2012(15 genes,8 taxa):Arabidopsis thalianaAT3G48170.1
ORTHOMCL2012(15 genes,8 taxa):Brassica oleraceaBol001350
ORTHOMCL2012(15 genes,8 taxa):Brassica oleraceaBol039925
ORTHOMCL2012(15 genes,8 taxa):Brassica rapaBra003781
ORTHOMCL2012(15 genes,8 taxa):Brassica rapaBra019528
ORTHOMCL2012(15 genes,8 taxa):Vitis viniferaGSVIVT01007829001
ORTHOMCL2012(15 genes,8 taxa):Vitis viniferaGSVIVT01032588001
ORTHOMCL2012(15 genes,8 taxa):Oryza sativaOs04t0464200-01
ORTHOMCL2012(15 genes,8 taxa):Oryza sativaOs08t0424500-01
ORTHOMCL2012(15 genes,8 taxa):Oryza sativaOs08t0424500-02
ORTHOMCL2012(15 genes,8 taxa):Populus trichocarpaPOPTR_0012s07730.1
ORTHOMCL2012(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s08190.1
ORTHOMCL2012(15 genes,8 taxa):Sorghum bicolorSb07g020650.1
ORTHOMCL2012(15 genes,8 taxa):Carica papayaevm.TU.supercontig_35.35
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31966095..34193489 (-)A.thalianaChr1:5891324..7007651 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:32363735..34243213 (+)B.rapaA09:3929405..4572882 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G749202813900928142744Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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