Basic Information
Gene Model:Bol039912
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000015
Sequence:
 | 
Gene Structure
Nucleotide Length:1557 bp
Transcript Length:1002 bp
Protein Length:333 aa
Strand:-
Location:C06: 32437751 : 32439307
Gene CDSs(2): 1-741 | 1297-1557 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF05687DUF822 17 170 1.9e-88IPR008540BZR1, transcriptional repressor
Segsegseg 118 136 NANot foundNot found
Segsegseg 26 39 NANot foundNot found
Segsegseg 11 19 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q8S3071e-147BZR1_ARATH Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis thaliana GN=BZR1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q3ED951e-129Q3ED95_ARATH Putative uncharacterized protein At1g19350.3 OS=Arabidopsis thaliana GN=At1g19350 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G750801e-147K14503BZR1_2brassinosteroid resistant 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11353(7 genes,6 taxa):Arabidopsis thalianaAT1G75080.1
ORTHOMCL11353(7 genes,6 taxa):Brassica oleraceaBol039912
ORTHOMCL11353(7 genes,6 taxa):Brassica rapaBra003772
ORTHOMCL11353(7 genes,6 taxa):Vitis viniferaGSVIVT01009656001
ORTHOMCL11353(7 genes,6 taxa):Populus trichocarpaPOPTR_0002s13480.1
ORTHOMCL11353(7 genes,6 taxa):Populus trichocarpaPOPTR_0014s04110.1
ORTHOMCL11353(7 genes,6 taxa):Carica papayaevm.TU.supercontig_64.54
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31966095..34193489 (-)A.thalianaChr1:5891324..7007651 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:32363735..34243213 (+)B.rapaA09:3929405..4572882 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G750802818550428188075Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo