Basic Information
Gene Model:Bol039895
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000015
Sequence:
 | 
Gene Structure
Nucleotide Length:537 bp
Transcript Length:537 bp
Protein Length:178 aa
Strand:-
Location:C06: 32302783 : 32303319
Gene CDSs(1): 1-537 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00036BZIP_BASIC 41 56 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Segsegseg 38 43 NANot foundNot found
Segsegseg 130 152 NANot foundNot found
HMMPfamPF00170bZIP_1 38 97 5.3e-11IPR011616bZIP transcription factor, bZIP-1
ProfileScanPS50217BZIP 36 78 10.438IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMSmartSM00338no description 34 98 3.4e-17IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P240684e-16OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
TrEMBL
Best HitE_value Description
C0Z2L52e-71C0Z2L5_ARATH AT1G75390 protein OS=Arabidopsis thaliana GN=AT1G75390 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002540836e-35K04371ERK1_2extracellular signal-regulated kinase 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13891(5 genes,4 taxa):Arabidopsis thalianaAT1G75390.1
ORTHOMCL13891(5 genes,4 taxa):Brassica oleraceaBol039895
ORTHOMCL13891(5 genes,4 taxa):Brassica rapaBra003755
ORTHOMCL13891(5 genes,4 taxa):Populus trichocarpaPOPTR_0002s03330.1
ORTHOMCL13891(5 genes,4 taxa):Populus trichocarpaPOPTR_0005s25290.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31966095..34193489 (-)A.thalianaChr1:5891324..7007651 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:31441768..34193489 (+)B.rapaA08:2097326..2988508 (+)39
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G753902829169828293008Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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